Evidence map›Paper›PMID 26673153›Full record

ArticleScientific reports2015

Metabolomic analysis with GC-MS to reveal potential metabolites and biological pathways involved in Pb &Cd stress response of radish roots.

Yan Wang, Liang Xu, Hong Shen, Juanjuan Wang, Wei Liu, Xianwen Zhu, Ronghua Wang, Xiaochuan Sun, Liwang Liu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
11.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 148 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Yan WangNational Key Laboratory of Crop Genetics and Germplasm Enhancement; Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education of P.R. China; College of Horticulture, Nanjing Agricultural University, Nanjing 210095, P.R. China.
Liang XuNational Key Laboratory of Crop Genetics and Germplasm Enhancement; Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education of P.R. China; College of Horticulture, Nanjing Agricultural University, Nanjing 210095, P.R. China.
Hong ShenNational Key Laboratory of Crop Genetics and Germplasm Enhancement; Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education of P.R. China; College of Horticulture, Nanjing Agricultural University, Nanjing 210095, P.R. China.
Juanjuan WangThe National Agro-Tech Extension and Service Center, Beijing 100125, P.R. China.
Wei LiuNational Key Laboratory of Crop Genetics and Germplasm Enhancement; Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education of P.R. China; College of Horticulture, Nanjing Agricultural University, Nanjing 210095, P.R. China.
Xianwen ZhuDepartment of Plant Sciences, North Dakota State University, Fargo, ND 58108, USA.
Ronghua WangNational Key Laboratory of Crop Genetics and Germplasm Enhancement; Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education of P.R. China; College of Horticulture, Nanjing Agricultural University, Nanjing 210095, P.R. China.
Xiaochuan SunNational Key Laboratory of Crop Genetics and Germplasm Enhancement; Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education of P.R. China; College of Horticulture, Nanjing Agricultural University, Nanjing 210095, P.R. China.
Liwang LiuNational Key Laboratory of Crop Genetics and Germplasm Enhancement; Engineering Research Center of Horticultural Crop Germplasm Enhancement and Utilization, Ministry of Education of P.R. China; College of Horticulture, Nanjing Agricultural University, Nanjing 210095, P.R. China.
Institute of Crop Science · JPNorth Dakota State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The radish (Raphanus sativus L.) is an important root vegetable crop. In this study, the metabolite profiling analysis of radish roots exposed to lead (Pb) and cadmium (Cd) stresses has been performed using gas chromatography-mass spectrometry (GC-MS). The score plots of principal component analysis (PCA) and partial least squares-discriminate analysis (PLS-DA) showed clear discrimination between control and Pb- or Cd-treated samples. The metabolic profiling indicated Pb or Cd stress could cause large metabolite alteration mainly on sugars, amino acids and organic acids. Furthermore, an integrated analysis of the effects of Pb or Cd stress was performed on the levels of metabolites and gene transcripts from our previous transcriptome work in radish roots. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of integration data demonstrated that exposure of radish to Pb stress resulted in profound biochemical changes including carbohydrate metabolism, energy metabolism and glutathione metabolism, while the treatment of Cd stress caused significant variations in energy production, amino acid metabolism and oxidative phosphorylation-related pathways. These results would facilitate further dissection of the mechanisms of heavy metal (HM) accumulation/tolerance in plants and the effective management of HM contamination in vegetable crops by genetic manipulation.

Indexed as

Amino AcidsCadmiumCarbohydrate MetabolismCarboxylic AcidsDiscriminant AnalysisGas Chromatography-Mass SpectrometryLeadLeast-Squares AnalysisMetabolic Networks and PathwaysMetabolomeMetabolomicsPlant RootsPrincipal Component AnalysisRaphanusStress, PhysiologicalAmino AcidsCadmiumCarboxylic AcidsLead

Identifiers

PMID26673153
PMCPMC4682141
OpenAlexW2208645267

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.