Evidence map›Paper›PMID 26673124›Full record

ArticleScientific reports2015

SMC1B is present in mammalian somatic cells and interacts with mitotic cohesin proteins.

Linda Mannini, Francesco Cucco, Valentina Quarantotti, Clelia Amato, Mara Tinti, Luigi Tana, Annalisa Frattini, Domenico Delia, Ian D Krantz, Rolf Jessberger and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 59 citations in OpenAlex.

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  6. The synergism of SMC1A cohesin gene silencing and bevacizumab against colorectal cancer.Journal of experimental & clinical cancer research : CR · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Linda ManniniIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Pisa, Italy.
Francesco CuccoIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Pisa, Italy.
Valentina QuarantottiIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Pisa, Italy.
Clelia AmatoIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Pisa, Italy.
Mara TintiIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Pisa, Italy.
Luigi TanaAzienda Ospedaliero Universitaria Pisana, U.O. Fisica Sanitaria, Pisa, Italy.
Annalisa FrattiniIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Milan, Italy.
Domenico DeliaFondazione IRCCS Istituto Nazionale Tumori, Department of Experimental Oncology, Milan, Italy.
Ian D KrantzDivision of Human Genetics, The Children's Hospital of Philadelphia and the Perelman School of Medicine at the University of Pennsylvania, Philadelphia, USA.
Rolf JessbergerInstitute of Physiological Chemistry, Technische Universität Dresden, Dresden, Germany.
Antonio MusioIstituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche, Pisa, Italy.
Institute of Genetic and Biomedical Research · ITAzienda Ospedaliera Universitaria Pisana · ITFondazione IRCCS Istituto Nazionale dei Tumori · ITTU Dresden · DEUniversity of Pennsylvania · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cohesin is an evolutionarily conserved protein complex that plays a role in many biological processes: it ensures faithful chromosome segregation, regulates gene expression and preserves genome stability. In mammalian cells, the mitotic cohesin complex consists of two structural maintenance of chromosome proteins, SMC1A and SMC3, the kleisin protein RAD21 and a fourth subunit either STAG1 or STAG2. Meiotic paralogs in mammals were reported for SMC1A, RAD21 and STAG1/STAG2 and are called SMC1B, REC8 and STAG3 respectively. It is believed that SMC1B is only a meiotic-specific cohesin member, required for sister chromatid pairing and for preventing telomere shortening. Here we show that SMC1B is also expressed in somatic mammalian cells and is a member of a mitotic cohesin complex. In addition, SMC1B safeguards genome stability following irradiation whereas its ablation has no effect on chromosome segregation. Finally, unexpectedly SMC1B depletion impairs gene transcription, particularly at genes mapping to clusters such as HOX and PCDHB. Genome-wide analyses show that cluster genes changing in expression are enriched for cohesin-SMC1B binding.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBlotting, WesternCell Cycle ProteinsCells, CulturedChromosomal Proteins, Non-HistoneChromosome SegregationCohesinsFibroblastsGene Expression ProfilingHumansMaleMice, KnockoutMitosisMolecular Sequence DataCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsSMC1B protein, humanSmc1l2 protein, mouse

Identifiers

PMID26673124
PMCPMC4682075
OpenAlexW2433553652

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.