Evidence map›Paper›PMID 26672511›Full record

ArticleBioorganic & medicinal chemistry2016

The generality of kinase-catalyzed biotinylation.

Chamara Senevirathne, D Maheeka Embogama, Thilani A Anthony, Ahmed E Fouda, Mary Kay H Pflum

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Kinase-catalyzed crosslinking: A comparison of ATP-crosslinker analogs.Bioorganic & medicinal chemistry letters · 2024
    Article
  3. Article
  4. Kinase-Catalyzed Biotinylation to Identify Phosphatase Substrates (K-BIPS).Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. K-BILDS: A Kinase Substrate Discovery Tool.Chembiochem : a European journal of chemical biology · 2017
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Chamara SenevirathneDepartment of Chemistry, Wayne State University, Detroit, MI 48202, United States.
D Maheeka EmbogamaDepartment of Chemistry, Wayne State University, Detroit, MI 48202, United States.
Thilani A AnthonyDepartment of Chemistry, Wayne State University, Detroit, MI 48202, United States.
Ahmed E FoudaDepartment of Chemistry, Wayne State University, Detroit, MI 48202, United States.
Mary Kay H PflumDepartment of Chemistry, Wayne State University, Detroit, MI 48202, United States. Electronic address: pflum@wayne.edu.

Funding

Chemical Approaches to Mapping Cell Signaling PathwaysR01GM079529 · NIGMS · WAYNE STATE UNIVERSITY · PI PFLUM, MARY KAY H · 2009 to 2018
$2.5M
NIGMS NIH HHS GM079529NIGMS NIH HHS R01 GM079529
6 · The paper itself

Abstract

Kinase-catalyzed protein phosphorylation is involved in a wide variety of cellular events. Development of methods to monitor phosphoproteins in normal and diseased states is critical to fully characterize cell signaling. Towards phosphoprotein analysis tools, our lab reported kinase-catalyzed labeling where γ-phosphate modified ATP analogs are utilized by kinases to label peptides or protein substrates with a functional tag. In particular, the ATP-biotin analog was developed for kinase-catalyzed biotinylation. However, kinase-catalyzed labeling has been tested rigorously with only a few kinases, preventing use of ATP-biotin as a general tool. Here, biotinylation experiments, gel or HPLC-based quantification, and kinetic measurements indicated that twenty-five kinases throughout the kinome tree accepted ATP-biotin as a cosubstrate. With this rigorous characterization of ATP-biotin compatibility, kinase-catalyzed labeling is now immediately useful for studying phosphoproteins and characterizing the role of phosphorylation in various biological events.

Indexed as

BiotinBiotinylationHumansKineticsMolecular Docking SimulationPhosphorylationProtein KinasesATP-biotinBiotinProtein KinasesATP analogsBiotinylationKinase enzymesKinome tree

Identifiers

PMID26672511
PMCPMC4921744

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.