Evidence map›Paper›PMID 26672008›Full record

ArticleGenome biology and evolution2015

Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens: Penicillium digitatum and Penicillium expansum.

Irene Julca, Samir Droby, Noa Sela, Marina Marcet-Houben, Toni Gabaldón

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 41 citations in OpenAlex.

  1. Green Mold of Citrus: Recent Insights intoJournal of agricultural and food chemistry · 2026
    Review
  2. An Overview of MajorJournal of fungi (Basel, Switzerland) · 2026
    Review
  3. Genome-resolved tracking ofFrontiers in fungal biology · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Incidence, Speciation, and Morpho-Genetic Diversity ofJournal of fungi (Basel, Switzerland) · 2021
    Article
  8. Genomic Analyses ofJournal of fungi (Basel, Switzerland) · 2021
    Article
  9. Review
  10. Fungal evolution: cellular, genomic and metabolic complexity.Biological reviews of the Cambridge Philosophical Society · 2020
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Fungal evolution: major ecological adaptations and evolutionary transitions.Biological reviews of the Cambridge Philosophical Society · 2019
    Review
  16. Article
  17. Article
  18. Sex and the Imperfect Fungi.Microbiology spectrum · 2017
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Irene JulcaBioinformatics and Genomics Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain Universitat Pompeu Fabra (UPF), Barcelona, Spain Universitat Autònoma De Barcelona, Spain.
Samir DrobyDepartment of Postharvest Science, ARO, the Volcani Center, Bet Dagan, Israel.
Noa SelaDepartment of Plant Pathology and Weed Research, The Volcani Center, Bet Dagan, Israel.
Marina Marcet-HoubenBioinformatics and Genomics Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain Universitat Pompeu Fabra (UPF), Barcelona, Spain.
Toni GabaldónBioinformatics and Genomics Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain Universitat Pompeu Fabra (UPF), Barcelona, Spain Institució Catalana De Recerca I Estudis Avançats (ICREA), Barcelona, Spain toni.gabaldon@crg.es.
Pompeu Fabra University · ESAgricultural Research Organization · ILCentre for Genomic Regulation · ESDead Sea and Arava Science Center · IL

Funding

European Research Council 310325
6 · The paper itself

Abstract

Penicillium digitatum and Penicillium expansum are two closely related fungal plant pathogens causing green and blue mold in harvested fruit, respectively. The two species differ in their host specificity, being P. digitatum restricted to citrus fruits and P. expansum able to infect a wide range of fruits after harvest. Although host-specific Penicillium species have been found to have a smaller gene content, it is so far unclear whether these different host specificities impact genome variation at the intraspecific level. Here we assessed genome variation across four P. digitatum and seven P. expansum isolates from geographically distant regions. Our results show very high similarity (average 0.06 SNPs [single nucleotide polymorphism] per kb) between globally distributed isolates of P. digitatum pointing to a recent expansion of a single lineage. This low level of genetic variation found in our samples contrasts with the higher genetic variability observed in the similarly distributed P. expansum isolates (2.44 SNPs per kb). Patterns of polymorphism in P. expansum indicate that recombination exists between genetically diverged strains. Consistent with the existence of sexual recombination and heterothallism, which was unknown for this species, we identified the two alternative mating types in different P. expansum isolates. Patterns of polymorphism in P. digitatum indicate a recent clonal population expansion of a single lineage that has reached worldwide distribution. We suggest that the contrasting patterns of genomic variation between the two species reflect underlying differences in population dynamics related with host specificities and related agricultural practices. It should be noted, however, that this results should be confirmed with a larger sampling of strains, as new strains may broaden the diversity so far found in P. digitatum.

Indexed as

Genetic SpeciationGenome, FungalPolymorphism, Single NucleotideEcosystemPenicilliumgenome variationgenomicsPenicillium

Identifiers

PMID26672008
PMCPMC4758248
OpenAlexW2220969209

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.