Evidence map›Paper›PMID 26670620›Full record

ArticlePloS one2015

New Infestin-4 Mutants with Increased Selectivity against Factor XIIa.

Vladimir N Kolyadko, Sofya V Lushchekina, Tatiana A Vuimo, Stepan S Surov, Ruzanna A Ovsepyan, Vera A Korneeva, Ivan I Vorobiev, Nadezhda A Orlova, Leonid Minakhin, Konstantin Kuznedelov and 3 more

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Vladimir N KolyadkoCenter for Theoretical Problems of Physicochemical Pharmacology of Russian Academy of Sciences, Moscow, Russian Federation.
Sofya V LushchekinaEmanuel Institute of Biochemical Physics of Russian Academy of Sciences, Moscow, Russian Federation.
Tatiana A VuimoFederal Research and Clinical Center of Pediatric Hematology, Oncology, and Immunology named after Dmitry Rogachev of Ministry of Health, Moscow, Russian Federation.
Stepan S SurovCenter for Theoretical Problems of Physicochemical Pharmacology of Russian Academy of Sciences, Moscow, Russian Federation.
Ruzanna A OvsepyanFederal Research and Clinical Center of Pediatric Hematology, Oncology, and Immunology named after Dmitry Rogachev of Ministry of Health, Moscow, Russian Federation.
Vera A KorneevaCenter for Theoretical Problems of Physicochemical Pharmacology of Russian Academy of Sciences, Moscow, Russian Federation.
Ivan I VorobievCenter "Bioengineering" of Russian Academy of Sciences, Moscow, Russian Federation.
Nadezhda A OrlovaCenter "Bioengineering" of Russian Academy of Sciences, Moscow, Russian Federation.
Leonid MinakhinWaksman Institute of Microbiology, Rutgers The State University of New Jersey, Piscataway, New Jersey, United States of America.
Konstantin KuznedelovWaksman Institute of Microbiology, Rutgers The State University of New Jersey, Piscataway, New Jersey, United States of America.
Konstantin V SeverinovWaksman Institute of Microbiology, Rutgers The State University of New Jersey, Piscataway, New Jersey, United States of America.
Fazoil I AtaullakhanovCenter for Theoretical Problems of Physicochemical Pharmacology of Russian Academy of Sciences, Moscow, Russian Federation.
Mikhail A PanteleevCenter for Theoretical Problems of Physicochemical Pharmacology of Russian Academy of Sciences, Moscow, Russian Federation.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Factor XIIa (fXIIa) is a serine protease that triggers the coagulation contact pathway and plays a role in thrombosis. Because it interferes with coagulation testing, the need to inhibit fXIIa exists in many cases. Infestin-4 (Inf4) is a Kazal-type inhibitor of fXIIa. Its specificity for fXIIa can be enhanced by point mutations in the protease-binding loop. We attempted to adapt Inf4 for the selective repression of the contact pathway under various in vitro conditions, e.g., during blood collection and in 'global' assays of tissue factor (TF)-dependent coagulation. First, we designed a set of new Inf4 mutants that, in contrast to wt-Inf4, had stabilized canonical conformations during molecular dynamics simulation. Off-target activities against factor Xa (fXa), plasmin, and other coagulation proteases were either reduced or eliminated in these recombinant mutants, as demonstrated by chromogenic assays. Interactions with fXIIa and fXa were also analyzed using protein-protein docking. Next, Mutant B, one of the most potent mutants (its Ki for fXIIa is 0.7 nM) was tested in plasma. At concentrations 5-20 μM, this mutant delayed the contact-activated generation of thrombin, as well as clotting in thromboelastography and thrombodynamics assays. In these assays, Mutant B did not affect coagulation initiated by TF, thus demonstrating sufficient selectivity and its potential practical significance as a reagent for coagulation diagnostics.

Indexed as

Amino Acid SequenceBlood CoagulationDrug DesignFactor XaFactor XIIaHumansInsect ProteinsKineticsMolecular Sequence DataMutant ProteinsPlant ProteinsProtease InhibitorsProtein BindingSubstrate SpecificityThioredoxinsFactor XaFactor XIIainfestin protein, Triatoma infestansInsect ProteinsMutant ProteinsPlant ProteinsProtease InhibitorsThioredoxinstrypsin inhibitor, Zea mays

Identifiers

PMID26670620
PMCPMC4684401

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.