Evidence map›Paper›PMID 26670243›Full record

ArticleViruses2015

Molecular Epidemiology of Human Rhinoviruses and Enteroviruses Highlights Their Diversity in Sub-Saharan Africa.

Arnaud G L'Huillier, Laurent Kaiser, Tom J Petty, Mary Kilowoko, Esther Kyungu, Philipina Hongoa, Gaël Vieille, Lara Turin, Blaise Genton, Valérie D'Acremont and 1 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. A molecular epidemiological perspective of rhinovirus types circulating in Amsterdam from 2007 to 2012.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Arnaud G L'HuillierGeneva University Hospitals and Medical School, 4 rue Gabrielle-Perret-Gentil, 1211 Geneva 14, Switzerland. arnaud.lhuillier@hcuge.ch.
Laurent KaiserGeneva University Hospitals and Medical School, 4 rue Gabrielle-Perret-Gentil, 1211 Geneva 14, Switzerland. laurent.kaiser@hcuge.ch.
Tom J PettySwiss Institute of Bioinformatics, Centre Medical Universitraire, 1 rue Michel-Servet, 1211 Geneva 4, Switzerland. tompetty2@gmail.com.
Mary KilowokoAmana Regional Referral Hospital, PO box 25411, Dar es Salaam TZ-02, United Republic of Tanzania. mckilowoko@yahoo.com.
Esther KyunguSt-Francis Hospital, PO box 73, Ifakara TZ-16, United Republic of Tanzania. noemie.boillat@chuv.ch.
Philipina HongoaSt-Francis Hospital, PO box 73, Ifakara TZ-16, United Republic of Tanzania. noemie.boillat@chuv.ch.
Gaël VieilleGeneva University Hospitals and Medical School, 4 rue Gabrielle-Perret-Gentil, 1211 Geneva 14, Switzerland. gael.vieille@hcuge.ch.
Lara TurinGeneva University Hospitals and Medical School, 4 rue Gabrielle-Perret-Gentil, 1211 Geneva 14, Switzerland. lara.turin@hcuge.ch.
Blaise GentonSwiss Tropical and Public Health Institute, Socinstrasse 57, Basel 4051, Switzerland. Blaise.Genton@chuv.ch.
Valérie D'AcremontSwiss Tropical and Public Health Institute, Socinstrasse 57, Basel 4051, Switzerland. Valerie.Dacremont@chuv.ch.
Caroline TapparelGeneva University Hospitals and Medical School, 4 rue Gabrielle-Perret-Gentil, 1211 Geneva 14, Switzerland. caroline.tapparel@hcuge.ch.
University Hospital of Geneva · CHSt. Francis Referral Hospital · TZAga Khan Hospital Dar es Salaam · TZSIB Swiss Institute of Bioinformatics · CHSwiss Tropical and Public Health Institute · CHUniversity Hospital of Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human rhinoviruses (HRVs) and enteroviruses (HEVs) belong to the Enterovirus genus and are the most frequent cause of infection worldwide, but data on their molecular epidemiology in Africa are scarce. To understand HRV and HEV molecular epidemiology in this setting, we enrolled febrile pediatric patients participating in a large prospective cohort assessing the causes of fever in Tanzanian children. Naso/oropharyngeal swabs were systematically collected and tested by real-time RT-PCR for HRV and HEV. Viruses from positive samples were sequenced and phylogenetic analyses were then applied to highlight the HRV and HEV types as well as recombinant or divergent strains. Thirty-eight percent (378/1005) of the enrolled children harboured an HRV or HEV infection. Although some types were predominant, many distinct types were co-circulating, including a vaccinal poliovirus, HEV-A71 and HEV-D68. Three HRV-A recombinants were identified: HRV-A36/HRV-A67, HRV-A12/HRV-A67 and HRV-A96/HRV-A61. Four divergent HRV strains were also identified: one HRV-B strain and three HRV-C strains. This is the first prospective study focused on HRV and HEV molecular epidemiology in sub-Saharan Africa. This systematic and thorough large screening with careful clinical data management confirms the wide genomic diversity of these viruses, brings new insights about their evolution and provides data about associated symptoms.

Indexed as

Genetic VariationEnterovirusEnterovirus InfectionsGenotypeHumansMolecular EpidemiologyNasopharynxOropharynxPhylogenyPicornaviridae InfectionsPrevalenceProspective StudiesReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionRhinovirusSequence Analysis, DNAchildrenemergententerovirusfevermolecular epidemiologynew typepicornavirusrecombinantrhinovirusTanzania

Identifiers

PMID26670243
PMCPMC4690871
OpenAlexW2196048002

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.