Evidence map›Paper›PMID 26670020›Full record

ArticleMicrobial drug resistance (Larchmont, N.Y.)2016

High Diversity of CTX-M Extended-Spectrum β-Lactamases in Municipal Wastewater and Urban Wetlands.

Timothy R Borgogna, Joanna-Lynn Borgogna, Jenna A Mielke, Celeste J Brown, Eva M Top, Ryan T Botts, David E Cummings

Abstract read
In one paragraph

Article in Microbial drug resistance (Larchmont, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Dynamics and virulence ofApplied and environmental microbiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Timothy R Borgogna1 Department of Biology, Point Loma Nazarene University , San Diego, California.
Joanna-Lynn Borgogna1 Department of Biology, Point Loma Nazarene University , San Diego, California.
Jenna A Mielke1 Department of Biology, Point Loma Nazarene University , San Diego, California.
Celeste J Brown2 Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho , Moscow, Idaho.
Eva M Top2 Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies (IBEST), University of Idaho , Moscow, Idaho.
Ryan T Botts3 Department of Mathematics, Information, and Computer Sciences, Point Loma Nazarene University , San Diego, California.
David E Cummings1 Department of Biology, Point Loma Nazarene University , San Diego, California.

Funding

Women's health: interplay of maternal diet and key demographics on neurological health in the rural frontier and remote WestP20GM103408 · NIGMS · UNIVERSITY OF IDAHO · PI Scott A Minnich · 2012 to 2026
$59.8M
Capture and Characterization of Self-Transmissible Plasmids from Urban Wetlands ER15GM102995 · NIGMS · POINT LOMA NAZARENE UNIVERSITY · PI CUMMINGS, DAVID EDWARD · 2013 to 2013
$253k
NIGMS NIH HHS P20 GM103408NIGMS NIH HHS R15 GM102995
6 · The paper itself

Abstract

The CTX-M-type extended-spectrum β-lactamases (ESBLs) present a serious public health threat as they have become nearly ubiquitous among clinical gram-negative pathogens, particularly the enterobacteria. To aid in the understanding and eventual control of the spread of such resistance genes, we sought to determine the diversity of CTX-M ESBLs not among clinical isolates, but in the environment, where weaker and more diverse selective pressures may allow greater enzyme diversification. This was done by examining the CTX-M diversity in municipal wastewater and urban coastal wetlands in southern California, United States, by Sanger sequencing of polymerase chain reaction amplicons. Of the five known CTX-M phylogroups (1, 2, 8, 9, and 25), only genes from groups 1 and 2 were detected in both wastewater treatment plants (WWTPs), and group 1 genes were also detected in one of the two wetlands after a winter rain. The highest relative abundance of blaCTX-M group 1 genes was in the sludge of one WWTP (2.1 × 10(-4) blaCTX-M copies/16S rRNA gene copy). Gene libraries revealed surprisingly high nucleotide sequence diversity, with 157 new variants not found in GenBank, representing 99 novel amino acid sequences. Our results indicate that the resistomes of WWTPs and urban wetlands contain diverse blaCTX-M ESBLs, which may constitute a mobile reservoir of clinically relevant resistance genes.

Indexed as

Water MicrobiologyAnti-Bacterial AgentsBacterial Typing Techniquesbeta-Lactamasesbeta-Lactam Resistancebeta-LactamsCaliforniaCitiesEscherichia coliEscherichia coli ProteinsGene ExpressionGenetic VariationGenotypeHumansKlebsiella pneumoniaePhylogenyAnti-Bacterial Agentsbeta-lactamase CTX-M, E colibeta-Lactamasesbeta-LactamsEscherichia coli ProteinsWastewater

Identifiers

PMID26670020
PMCPMC4913485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.