Evidence map›Paper›PMID 26668394›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Bovine NK-lysin: Copy number variation and functional diversification.

Junfeng Chen, John Huddleston, Reuben M Buckley, Maika Malig, Sara D Lawhon, Loren C Skow, Mi Ok Lee, Evan E Eichler, Leif Andersson, James E Womack

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 41 citations in OpenAlex.

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  10. The Immunology of Bovine Respiratory Disease: Recent Advancements.The Veterinary clinics of North America. Food animal practice · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Junfeng ChenDepartment of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843;
John HuddlestonDepartment of Genome Sciences, University of Washington, Seattle, WA 98195; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195;
Reuben M BuckleySchool of Biological Sciences, University of Adelaide, Adelaide 5005, Australia;
Maika MaligDepartment of Genome Sciences, University of Washington, Seattle, WA 98195;
Sara D LawhonDepartment of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843;
Loren C SkowDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843;
Mi Ok LeeDepartment of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843;
Evan E EichlerDepartment of Genome Sciences, University of Washington, Seattle, WA 98195; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195;
Leif AnderssonDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843; Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, SE 75123, Sweden; Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, SE 75007, Sweden.
James E WomackDepartment of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843; jwomack@cvm.tamu.edu.
Texas A&M University · USHoward Hughes Medical Institute · USUniversity of Adelaide · AUUniversity of Washington · USUppsala University · SE

Funding

Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
NHGRI NIH HHS R01 HG002385
6 · The paper itself

Abstract

NK-lysin is an antimicrobial peptide and effector protein in the host innate immune system. It is coded by a single gene in humans and most other mammalian species. In this study, we provide evidence for the existence of four NK-lysin genes in a repetitive region on cattle chromosome 11. The NK2A, NK2B, and NK2C genes are tandemly arrayed as three copies in ∼30-35-kb segments, located 41.8 kb upstream of NK1. All four genes are functional, albeit with differential tissue expression. NK1, NK2A, and NK2B exhibited the highest expression in intestine Peyer's patch, whereas NK2C was expressed almost exclusively in lung. The four peptide products were synthesized ex vivo, and their antimicrobial effects against both Gram-positive and Gram-negative bacteria were confirmed with a bacteria-killing assay. Transmission electron microcopy indicated that bovine NK-lysins exhibited their antimicrobial activities by lytic action in the cell membranes. In summary, the single NK-lysin gene in other mammals has expanded to a four-member gene family by tandem duplications in cattle; all four genes are transcribed, and the synthetic peptides corresponding to the core regions are biologically active and likely contribute to innate immunity in ruminants.

Indexed as

Gene DosageMultigene FamilyAmino Acid SequenceAnimalsBase SequenceCattleChromosomes, MammalianEscherichia coliGene Expression ProfilingGene OrderMicroscopy, Electron, TransmissionMolecular Sequence DataOrgan SpecificityPeptidesPhylogenyProteolipidsNK-lysinPeptidesProteolipidsantimicrobial peptidescopy number polymorphismgene family expansionNK-lysinsegmental duplication

Identifiers

PMID26668394
PMCPMC4702975
OpenAlexW2214884837

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.