Evidence map›Paper›PMID 26668372›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Specific induction of endogenous viral restriction factors using CRISPR/Cas-derived transcriptional activators.

Hal P Bogerd, Anand V R Kornepati, Joy B Marshall, Edward M Kennedy, Bryan R Cullen

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 60 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. A CRISPR-Cas Cure for HIV/AIDS.International journal of molecular sciences · 2023
    Review
  10. Article
  11. Review
  12. Therapeutic Applications of the CRISPR-Cas System.Bioengineering (Basel, Switzerland) · 2022
    Review
  13. Review
  14. HIV cure strategies: which ones are appropriate for Africa?Cellular and molecular life sciences : CMLS · 2022
    Review
  15. Review
  16. Review
  17. Review
  18. CRISPR/Cas technology as a promising weapon to combat viral infections.BioEssays : news and reviews in molecular, cellular and developmental biology · 2021
    Review
  19. CRISPR-Cas9: A Preclinical and Clinical Perspective for the Treatment of Human Diseases.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Hal P BogerdDepartment of Molecular Genetics and Microbiology, Center for Virology, Duke University Medical Center, Durham, NC 27710.
Anand V R KornepatiDepartment of Molecular Genetics and Microbiology, Center for Virology, Duke University Medical Center, Durham, NC 27710.
Joy B MarshallDepartment of Molecular Genetics and Microbiology, Center for Virology, Duke University Medical Center, Durham, NC 27710.
Edward M KennedyDepartment of Molecular Genetics and Microbiology, Center for Virology, Duke University Medical Center, Durham, NC 27710.
Bryan R CullenDepartment of Molecular Genetics and Microbiology, Center for Virology, Duke University Medical Center, Durham, NC 27710 bryan.cullen@duke.edu.
Duke University Hospital · USUniversity of Minnesota · USDuke Medical Center · US

Funding

Social and Behavioral Sciences CoreP30AI064518 · NIAID · DUKE UNIVERSITY · PI Nwora Lance Okeke · 2005 to 2026
$50.5M
NIAID NIH HHS P30 AI064518NIAID NIH HHS P30-AI064518
6 · The paper itself

Abstract

Whereas several mammalian proteins can restrict the replication of HIV-1 and other viruses, these are often not expressed in relevant target cells. A potential method to inhibit viral replication might therefore be to use synthetic transcription factors to induce restriction factor expression. In particular, mutants of the RNA-guided DNA binding protein Cas9 that have lost their DNA cleavage activity could be used to recruit transcription activation domains to specific promoters. However, initial experiments revealed only weak activation unless multiple promoter-specific single guide RNAs (sgRNAs) were used. Recently, the recruitment of multiple transcription activation domains by a single sgRNA, modified to contain MS2-derived stem loops that recruit fusion proteins consisting of the MS2 coat protein linked to transcription activation domains, was reported to induce otherwise silent cellular genes. Here, we demonstrate that such "synergistic activation mediators" can induce the expression of two restriction factors, APOBEC3G (A3G) and APOBEC3B (A3B), in human cells that normally lack these proteins. We observed modest activation of endogenous A3G or A3B expression using single sgRNAs but high expression when two sgRNAs were used. Whereas the induced A3G and A3B proteins both blocked infection by an HIV-1 variant lacking a functional vif gene by inducing extensive dC-to-dU editing, only the induced A3B protein inhibited wild-type HIV-1. These data demonstrate that Cas9-derived transcriptional activators have the potential to be used for screens for endogenous genes that affect virus replication and raise the possibility that synthetic transcription factors might prove clinically useful if efficient delivery mechanisms could be developed.

Indexed as

Transcriptional ActivationAPOBEC-3G DeaminaseBase SequenceBlotting, WesternCell LineCRISPR-Cas SystemsCytidine DeaminaseGene ExpressionHEK293 CellsHeLa CellsHumansMinor Histocompatibility AntigensReverse Transcriptase Polymerase Chain Reactionvif Gene Products, Human Immunodeficiency VirusAPOBEC3B protein, humanAPOBEC-3G DeaminaseAPOBEC3G protein, humanCytidine DeaminaseMinor Histocompatibility Antigensvif Gene Products, Human Immunodeficiency Virusvif protein, Human immunodeficiency virus 1APOBEC3 proteinsCRISPR/CasHIV-1restriction factorssynthetic transcription factors

Identifiers

PMID26668372
PMCPMC4703010
OpenAlexW2202193919

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.