Evidence map›Paper›PMID 26668231›Full record

ArticleMolecular systems biology2015

Cell cycle networks link gene expression dysregulation, mutation, and brain maldevelopment in autistic toddlers.

Tiziano Pramparo, Michael V Lombardo, Kathleen Campbell, Cynthia Carter Barnes, Steven Marinero, Stephanie Solso, Julia Young, Maisi Mayo, Anders Dale, Clelia Ahrens-Barbeau and 5 more

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 102 citations in OpenAlex.

  1. Pooled it
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  11. BRCA1 and ELK-1 regulate neural progenitor cell fate in the optic tectum in response to visual experience inProceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Tiziano PramparoDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Michael V LombardoDepartment of Psychology, University of Cyprus, Nicosia, Cyprus Center for Applied Neuroscience, University of Cyprus, Nicosia, Cyprus Autism Research Centre, Department of Psychiatry, University of Cambridge, Cambridge, UK.
Kathleen CampbellDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Cynthia Carter BarnesDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Steven MarineroDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Stephanie SolsoDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Julia YoungDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Maisi MayoDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Anders DaleDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Clelia Ahrens-BarbeauDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Sarah S MurrayScripps Genomic Medicine & The Scripps Translational Sciences Institute (STSI), La Jolla, CA, USA Department of Pathology, University of California San Diego, La Jolla, CA, USA.
Linda LopezDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Nathan LewisNovo Nordisk Foundation Center for Biosustainability at the UCSD School of Medicine, and Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.
Karen PierceDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA.
Eric CourchesneDepartment of Neurosciences, UC San Diego Autism Center, School of Medicine University of California San Diego, La Jolla, CA, USA ecourchesne@ucsd.edu.
University of California, San Diego · USFoundation Center · USScripps Research Institute · USUniversity of Cyprus · CY

Funding

UC San Diego Clinical and Translational Research InstituteKL2TR001444 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DEPP, COLIN A. · 2015 to 2024
$15.4M
TARGETING GENETIC PATHWAYS FOR BRAIN OVERGROWTH IN AUTISM SPECTRUM DISORDERSP50MH081755 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COURCHESNE, ERIC · 2007 to 2013
$10.3M
INVESTIGATON OF COGNITIVE DYSFUNCTION IN AUTISMR01MH036840 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COURCHESNE, ERIC · 1985 to 2011
$5.9M
Studying the Biology and Behavior of Autism at 1-Year: The Well-Baby Check-Up AppR01MH080134 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PIERCE, KAREN L · 2008 to 2017
$3.3M
San Diego Clinical and Translational Research InstituteKL2TR000099 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S · 2012 to 2014
$1.1M
NCATS NIH HHS 1KL2TR001444NCATS NIH HHS KL2 TR000099NCATS NIH HHS KL2TR00099NCATS NIH HHS KL2 TR001444NCRR NIH HHS NIH 1U54RR025204-01NIMH NIH HHS P50 MH081755NIMH NIH HHS P50-MH081755NIMH NIH HHS R01 MH036840NIMH NIH HHS R01-MH036840NIMH NIH HHS R01 MH080134NIMH NIH HHS R01-MH080134
6 · The paper itself

Abstract

Genetic mechanisms underlying abnormal early neural development in toddlers with Autism Spectrum Disorder (ASD) remain uncertain due to the impossibility of direct brain gene expression measurement during critical periods of early development. Recent findings from a multi-tissue study demonstrated high expression of many of the same gene networks between blood and brain tissues, in particular with cell cycle functions. We explored relationships between blood gene expression and total brain volume (TBV) in 142 ASD and control male toddlers. In control toddlers, TBV variation significantly correlated with cell cycle and protein folding gene networks, potentially impacting neuron number and synapse development. In ASD toddlers, their correlations with brain size were lost as a result of considerable changes in network organization, while cell adhesion gene networks significantly correlated with TBV variation. Cell cycle networks detected in blood are highly preserved in the human brain and are upregulated during prenatal states of development. Overall, alterations were more pronounced in bigger brains. We identified 23 candidate genes for brain maldevelopment linked to 32 genes frequently mutated in ASD. The integrated network includes genes that are dysregulated in leukocyte and/or postmortem brain tissue of ASD subjects and belong to signaling pathways regulating cell cycle G1/S and G2/M phase transition. Finally, analyses of the CHD8 subnetwork and altered transcript levels from an independent study of CHD8 suppression further confirmed the central role of genes regulating neurogenesis and cell adhesion processes in ASD brain maldevelopment.

Indexed as

Gene Regulatory NetworksMutationAutism Spectrum DisorderBrainCell AdhesionCell Cycle ProteinsChild, PreschoolComputational BiologyGene Expression ProfilingGene Expression RegulationHumansInfantMaleCell Cycle ProteinsAutism Spectrum Disorderbrain developmentco‐expressiongene networks

Identifiers

PMID26668231
PMCPMC4704485
OpenAlexW2215644351

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.