Evidence map›Paper›PMID 26668025›Full record

ArticleClinical journal of the American Society of Nephrology : CJASN2016

Association of APOL1 Genotype with Renal Histology among Black HIV-Positive Patients Undergoing Kidney Biopsy.

Mohamed G Atta, Michelle M Estrella, Karl L Skorecki, Jeffrey B Kopp, Cheryl A Winkler, Walter G Wasser, Revital Shemer, Lorraine C Racusen, Michael Kuperman, Matthew C Foy and 2 more

Abstract read
In one paragraph

Article in Clinical journal of the American Society of Nephrology : CJASN, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Guideline
  3. Article
  4. Kidney international reports · 2026
    Article
  5. Review
  6. Apolipoprotein L1 and mechanisms of kidney disease susceptibility.Current opinion in nephrology and hypertension · 2021
    Review
  7. Review
  8. Observational
  9. APOL1 Genetic Testing in Living Kidney Transplant Donors.American journal of kidney diseases : the official journal of the National Kidney Foundation · 2019
    Review
  10. Kidney Disease in HIV Infection.Journal of clinical medicine · 2019
    Review
  11. Review
  12. Review
  13. Association BetweenJournal of the American Heart Association · 2017
    Article
  14. Review
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Mohamed G AttaDepartments of Medicine and matta1@jhmi.edu.
Michelle M EstrellaDepartments of Medicine and.
Karl L SkoreckiRappaport Faculty of Medicine and Research Institute, Technion-Israel Institute of Technology, Haifa, Israel; Department of Medicine, Rambam Health Care Campus, Haifa, Israel;
Jeffrey B KoppKidney Disease Section, Kidney Diseases Branch, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland;
Cheryl A WinklerBasic Research Laboratory, Center for Cancer Research, National Cancer Institute Frederick, Leidos Biomedical Research, Inc., Frederick National Laboratory, Frederick, Maryland;
Walter G WasserDepartment of Medicine, Rambam Health Care Campus, Haifa, Israel;
Revital ShemerRappaport Faculty of Medicine and Research Institute, Technion-Israel Institute of Technology, Haifa, Israel; Department of Medicine, Rambam Health Care Campus, Haifa, Israel;
Lorraine C RacusenPathology, Johns Hopkins University School of Medicine, Baltimore, Maryland;
Michael KupermanDepartment of Pathology, Baylor University Medical Center, Dallas, Texas; and.
Matthew C FoyDivision of Internal Medicine, Louisiana State University Health Science Center, Baton Rouge, Louisiana.
Gregory M LucasDepartments of Medicine and.
Derek M FineDepartments of Medicine and.

Funding

Vaccine Response and Immunotherapeutics SWGP30AI094189 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Richard E. Chaisson · 2012 to 2026
$67.0M
VIRAL PATHOGENESIS OF HIV ASSOCIATED NEPHROPATHYP01DK056492 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI KLOTMAN, PAUL EVAN · 1999 to 2021
$27.8M
Focal Segmental Glomerulosclerosis: Genetics & MechanismsZIADK043308 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI KOPP, JEFFREY BURNETT · 2009 to 2024
$15.7M
Focal segmental glomerulosclerosis: HIV-associated nephropathyZIADK043411 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI HEYMANN, JURGEN · 2009 to 2024
$7.3M
Identification of Genetic Factors Associated with Infectious DiseasesZIABC010297 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WINKLER, CHERYL · 2009 to 2022
$6.3M
Early-Stage Chronic Kidney Disease in HIV-infected IndividualsR01DA026770 · NIDA · JOHNS HOPKINS UNIVERSITY · PI LUCAS, GREGORY M · 2010 to 2020
$5.7M
Treatment outcomes and comorbidity in HIV-infected IDUK24DA035684 · NIDA · JOHNS HOPKINS UNIVERSITY · PI LUCAS, GREGORY M · 2014 to 2024
$1.5M
Burden of Chronic Kidney Disease in HIV InfectionK23DK081317 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI ESTRELLA, MICHELLE M · 2009 to 2013
$835k
Intramural NIH HHSNIAID NIH HHS P30 AI094189NIAID NIH HHS P30AI094189NIDA NIH HHS K24 DA035684NIDA NIH HHS K24DA035684NIDA NIH HHS R01 DA026770NIDA NIH HHS R01DA026770NIDDK NIH HHS K23 DK081317NIDDK NIH HHS K23DK081317NIDDK NIH HHS P01 DK056492NIDDK NIH HHS P01DK056492PHS HHS HHSN26120080001E
6 · The paper itself

Abstract

BACKGROUND AND

objectivesPrior studies have shown that the APOL1 risk alleles are associated with a greater risk of HIV-associated nephropathy and FSGS among blacks who are HIV positive. We sought to determine whether the APOL1 high-risk genotype incrementally improved the prediction of these underlying lesions beyond conventional clinical factors. DESIGN, SETTING, PARTICIPANTS, & MEASUREMENTS: In a cross-sectional study, we analyzed data from 203 blacks who are HIV positive, underwent kidney biopsies between 1996 and 2011, and were genotyped for the APOL1 G1 and G2 alleles. Predictive logistic regression models with conventional clinical factors were compared with those that also included APOL1 genotype using receiver-operating curves and bootstrapping analyses with crossvalidation.

resultsThe addition of APOL1 genotype to HIV-related risk factors for kidney disease in a predictive model improved the prediction of non-HIV-associated nephropathy FSGS, specifically, increasing the c statistic from 0.65 to 0.74 (P=0.04). Although two risk alleles were significantly associated with higher odds of HIV-associated nephropathy, APOL1 genotype did not add incrementally to the prediction of this specific histopathology.

conclusionsAPOL1 genotype may provide additional diagnostic information to traditional clinical variables in predicting underlying FSGS spectrum lesions in blacks who are HIV positive. In contrast, although APOL1 risk genotype predicts HIV-associated nephropathy, it lacked a high c statistic sufficient for discrimination to eliminate the role of kidney biopsy in the clinical care of blacks who are HIV positive with nephrotic proteinuria or unexplained kidney disease.

Indexed as

AdultAIDS-Associated NephropathyApolipoprotein L1ApolipoproteinsBiopsyBlack or African AmericanChi-Square DistributionCross-Sectional StudiesFemaleGenetic Predisposition to DiseaseGlomerulosclerosis, Focal SegmentalHIV InfectionsHumansKidneyLipoproteins, HDLLogistic ModelsAPOL1 protein, humanApolipoprotein L1ApolipoproteinsLipoproteins, HDLAfrican AmericansAIDS-associated nephropathyallelesAPOL1biopsygenotypeglomerulosclerosis, focal segmentalHIVhumanskidney diseases

Identifiers

PMID26668025
PMCPMC4741048

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.