Evidence map›Paper›PMID 26667666›Full record

ArticleScientific reports2015

NGS-based Molecular diagnosis of 105 eyeGENE(®) probands with Retinitis Pigmentosa.

Zhongqi Ge, Kristen Bowles, Kerry Goetz, Hendrik P N Scholl, Feng Wang, Xinjing Wang, Shan Xu, Keqing Wang, Hui Wang, Rui Chen

Abstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. A Comparative Evaluation of the Genetic Variant Spectrum in theInternational journal of molecular sciences · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. HGG advances · 2023
    Article
  9. Article
  10. Article
  11. Retinitis Pigmentosa: Current Clinical Management and Emerging Therapies.International journal of molecular sciences · 2023
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. The Natural History ofInternational journal of molecular sciences · 2022
    Article
  17. Observational
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Zhongqi GeHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Kristen BowlesWilmer Eye Institute, Johns Hopkins University, Baltimore, Maryland, USA.
Kerry GoetzOphthalmic Genetics and Visual Function Branch, National Eye Institute/National Institutes of Health, Bethesda, Maryland, USA.
Hendrik P N SchollWilmer Eye Institute, Johns Hopkins University, Baltimore, Maryland, USA.
Feng WangHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Xinjing WangOphthalmic Genetics and Visual Function Branch, National Eye Institute/National Institutes of Health, Bethesda, Maryland, USA.
Shan XuHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Keqing WangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Hui WangHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Rui ChenHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.

Funding

VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
Molecular Basis of Human Visual System DisordersR01EY022356 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI RUI CHEN · 2012 to 2026
$6.1M
Genomic analysis in genes responsible for eye abnormalities in patientsZIAEY000483 · NEI · NATIONAL EYE INSTITUTE · PI WANG, XINJING · 2009 to 2016
$5.2M
MOLECULAR GENETICS EMPHASIZING VISION RESEARCHT32EY007102 · NEI · BAYLOR COLLEGE OF MEDICINE · PI MARDON, GRAEME · 1988 to 2019
$3.8M
FGI: Acquisition of an Illumina Genome Analyzer System for Functional Genomic ResS10RR026550 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2010 to 2010
$500k
NCRR NIH HHS 1S10RR026550NCRR NIH HHS S10 RR026550NEI NIH HHS 2T32EY007102-21A1NEI NIH HHS P30 EY002520NEI NIH HHS R01 EY022356NEI NIH HHS R01EY022356NEI NIH HHS T32 EY007102
6 · The paper itself

Abstract

The National Ophthalmic Disease Genotyping and Phenotyping Network (eyeGENE(®)) was established in an effort to facilitate basic and clinical research of human inherited eye disease. In order to provide high quality genetic testing to eyeGENE(®)'s enrolled patients which potentially aids clinical diagnosis and disease treatment, we carried out a pilot study and performed Next-generation sequencing (NGS) based molecular diagnosis for 105 Retinitis Pigmentosa (RP) patients randomly selected from the network. A custom capture panel was designed, which incorporated 195 known retinal disease genes, including 61 known RP genes. As a result, disease-causing mutations were identified in 52 out of 105 probands (solving rate of 49.5%). A total of 82 mutations were identified, and 48 of them were novel. Interestingly, for three probands the molecular diagnosis was inconsistent with the initial clinical diagnosis, while for five probands the molecular information suggested a different inheritance model other than that assigned by the physician. In conclusion, our study demonstrated that NGS target sequencing is efficient and sufficiently precise for molecular diagnosis of a highly heterogeneous patient cohort from eyeGENE(®).

Indexed as

High-Throughput Nucleotide SequencingAntigens, NeoplasmCell Cycle ProteinsChildChild, PreschoolCohort StudiesCytoskeletal ProteinsFemaleGenetic Association StudiesGenetic TestingHumansInheritance PatternsMaleMolecular Diagnostic TechniquesMutationNeoplasm ProteinsADGRV1 protein, humanAntigens, NeoplasmCell Cycle ProteinsCep290 protein, humanCytoskeletal ProteinsGRM6 protein, humanNeoplasm ProteinsReceptors, GlutamateReceptors, G-Protein-Coupled

Identifiers

PMID26667666
PMCPMC4678898

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.