Evidence map›Paper›PMID 26667017›Full record

ArticleHuman genetics2016

Chimeric transcripts resulting from complex duplications in chromosome Xq28.

Luciana W Zuccherato, Benjamin Alleva, Marjorie A Whiters, Claudia M B Carvalho, James R Lupski

Abstract read
In one paragraph

Article in Human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.2field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A germline chimeric KANK1-DMRT1 transcript derived from a complex structural variant is associated with a congenital heart defect segregating across five generations.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2024
    Article
  5. Article
  6. Clan genomics: From OMIM phenotypic traits to genes and biology.American journal of medical genetics. Part A · 2021
    Article
  7. Chromoanagenesis Event Underlies aFrontiers in genetics · 2021
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Luciana W ZuccheratoDepartment of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Room 604 BG, Houston, TX, 77030, USA.
Benjamin AllevaBiology Department, University of Iowa, Iowa City, IA, USA.
Marjorie A WhitersDepartment of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Room 604 BG, Houston, TX, 77030, USA.
Claudia M B CarvalhoDepartment of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Room 604 BG, Houston, TX, 77030, USA.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Room 604 BG, Houston, TX, 77030, USA. jlupski@bcm.edu.
Baylor College of Medicine · USUniversity of Iowa · US

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Nonrecurrent rearrangements, genome architecture and neurodegenerative disease.R01NS058529 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2009 to 2017
$5.0M
NHGRI NIH HHS U54 HG006542NHGRI NIH HHS UM1 HG006542NINDS NIH HHS R01 NS058529
6 · The paper itself

Abstract

Gene fusions have been observed in somatic alterations in cancer and in schizophrenia. However, the underlying mechanism(s) for their formation are poorly understood. We experimentally demonstrated the expression of splicing variants of in silico predicted chimeric genes F8/CSAG1 and BCAP31/TEX28 in two individuals with de novo complex genomic rearrangements of Xq28; F8/CSAG1 includes exonization of an ERVL-MaLR intronic repetitive element. We provide evidence that replicative repair may contribute to exon shuffling processes and diversify the repertoire of expressed transcripts.

Indexed as

Gene DuplicationTranscription, GeneticAntigens, NeoplasmBase SequenceCell LineChromosomes, Human, XExonsGene Expression RegulationGene RearrangementHumansIntronsMaleMembrane ProteinsMolecular Sequence DataNeoplasm ProteinsRNA, MessengerAntigens, NeoplasmBCAP31 protein, humanCSAG1 protein, humanMembrane ProteinsNeoplasm ProteinsRNA, MessengerTEX28 protein, human

Identifiers

PMID26667017
PMCPMC5485664
OpenAlexW2197591032

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.