Evidence map›Paper›PMID 26666919›Full record

ArticleAntimicrobial agents and chemotherapy2015

Comparison of Verona Integron-Borne Metallo-β-Lactamase (VIM) Variants Reveals Differences in Stability and Inhibition Profiles.

Anne Makena, Azer Ö Düzgün, Jürgen Brem, Michael A McDonough, Anna M Rydzik, Martine I Abboud, Ayşegül Saral, Ayşegül Ç Çiçek, Cemal Sandalli, Christopher J Schofield

Abstract readComparative Study
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Overcoming beta-lactam resistance inFrontiers in cellular and infection microbiology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Carbapenem Use Is Driving the Evolution of Imipenemase 1 Variants.Antimicrobial agents and chemotherapy · 2021
    Article
  12. Review
  13. 4-(Biomolecules · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Anne MakenaChemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, United Kingdom.
Azer Ö DüzgünDepartment of Genetics and Bioengineering, Gümüşhane University, Gümüşhane, Turkey.
Jürgen BremChemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, United Kingdom.
Michael A McDonoughChemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, United Kingdom.
Anna M RydzikChemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, United Kingdom.
Martine I AbboudChemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, United Kingdom.
Ayşegül SaralDepartment of Biology, Coruh University, Artvin, Turkey.
Ayşegül Ç ÇiçekDepartment of Medical Microbiology, Recep Tayyip Erdoğan University, Rize, Turkey.
Cemal SandalliDepartment of Biology, Recep Tayyip Erdoğan University, Rize, Turkey cemal.sandalli@erdogan.edu.tr christopher.schofield@chem.ox.ac.uk.
Christopher J SchofieldChemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford, United Kingdom cemal.sandalli@erdogan.edu.tr christopher.schofield@chem.ox.ac.uk.

Funding

Medical Research Council G1100135Medical Research Council MR/L007665/1
6 · The paper itself

Abstract

Metallo-β-lactamases (MBLs) are of increasing clinical significance; the development of clinically useful MBL inhibitors is challenged by the rapid evolution of variant MBLs. The Verona integron-borne metallo-β-lactamase (VIM) enzymes are among the most widely distributed MBLs, with >40 VIM variants having been reported. We report on the crystallographic analysis of VIM-5 and comparison of biochemical and biophysical properties of VIM-1, VIM-2, VIM-4, VIM-5, and VIM-38. Recombinant VIM variants were produced and purified, and their secondary structure and thermal stabilities were investigated by circular dichroism analyses. Steady-state kinetic analyses with a representative panel of β-lactam substrates were carried out to compare the catalytic efficiencies of the VIM variants. Furthermore, a set of metalloenzyme inhibitors were screened to compare their effects on the different VIM variants. The results reveal only small variations in the kinetic parameters of the VIM variants but substantial differences in their thermal stabilities and inhibition profiles. Overall, these results support the proposal that protein stability may be a factor in MBL evolution and highlight the importance of screening MBL variants during inhibitor development programs.

Indexed as

Bacterial Proteinsbeta-Lactamase Inhibitorsbeta-LactamasesCircular DichroismCrystallography, X-RayEnzyme StabilityIntegronsRecombinant ProteinsBacterial Proteinsbeta-lactamase bla(vim-2)beta-lactamase bla(VIM-4), Pseudomonas aeruginosabeta-Lactamase Inhibitorsbeta-Lactamasesbeta-lactamase VIM-5, Pseudomonas aeruginosaRecombinant ProteinsVIM-1 metallo-beta-lactamase

Identifiers

PMID26666919
PMCPMC4775916

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.