Evidence map›Paper›PMID 26666262›Full record

ArticleThe Journal of experimental medicine2016

Integrative genetic analysis of mouse and human AML identifies cooperating disease alleles.

Megan A Hatlen, Kanika Arora, Vladimir Vacic, Ewa A Grabowska, Willey Liao, Bridget Riley-Gillis, Dayna M Oschwald, Lan Wang, Jacob E Joergens, Alan H Shih and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Epigenetic regulation by ASXL1 in myeloid malignancies.International journal of hematology · 2023
    Review
  5. Ten-Eleven-Translocation Genes in Cancer.Cancer treatment and research · 2023
    Review
  6. The Role of Somatic Mutations in Acute Myeloid Leukemia Pathogenesis.Cold Spring Harbor perspectives in medicine · 2021
    Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. TET2 in Normal and Malignant Hematopoiesis.Cold Spring Harbor perspectives in medicine · 2017
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Megan A HatlenMolecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Weill Cornell Graduate School of Medical Sciences, New York, NY 10065.
Kanika AroraNew York Genome Center, New York, NY 10013.
Vladimir VacicNew York Genome Center, New York, NY 10013.
Ewa A GrabowskaNew York Genome Center, New York, NY 10013.
Willey LiaoNew York Genome Center, New York, NY 10013.
Bridget Riley-GillisNew York Genome Center, New York, NY 10013.
Dayna M OschwaldNew York Genome Center, New York, NY 10013.
Lan WangDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136 Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, FL 33136.
Jacob E JoergensHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Alan H ShihHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Franck RapaportHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Shengqing GuPrincess Margaret Cancer Center, University Health Network, Toronto, Ontario M5G 2M9, Canada Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5G 1L7, Canada.
Francesca VozaHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Takashi AsaiDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136 Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, FL 33136.
Benjamin G NeelPrincess Margaret Cancer Center, University Health Network, Toronto, Ontario M5G 2M9, Canada Department of Medical Biophysics, University of Toronto, Toronto, Ontario M5G 1L7, Canada Laura and Isaac Perlmutter Cancer Center, New York University Langone Medical Center, New York, NY 10016.
Michael G KharasMolecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Center for Cellular Engineering, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Center for Stem Cell Biology, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Mithat GonenEpidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Ross L LevineHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065 Leukemia Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065 snimer@med.miami.edu leviner@mskcc.org.
Stephen D NimerDepartment of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136 Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, FL 33136 Department of Medicine, Miller School of Medicine, University of Miami, Miami, FL 33136 snimer@med.miami.edu leviner@mskcc.org.
Memorial Sloan Kettering Cancer Center · USNew York Genome Center · USUniversity Health Network · CAUniversity of Miami · USSylvester Comprehensive Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Role of TET2 mutations in malignant transformation and acute myeloid leukemiaR01CA173636 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI AIFANTIS, IANNIS, LEVINE, ROSS L · 2013 to 2022
$6.3M
Targeting p300 and lysine acetylation in AMLR01CA166835 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Stephen D. Nimer · 2012 to 2026
$4.6M
ECOG-ACRIN INTEGRATED LEUKEMIA TRANSLATIONAL RESEARCH CENTERU10CA180827 · NCI · MONTEFIORE MEDICAL CENTER (BRONX, NY) · PI LEVINE, ROSS L, MELNICK, ARI M. · 2014 to 2018
$3.0M
NCI NIH HHS CA172636-01NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA 166835NCI NIH HHS R01 CA166835NCI NIH HHS R01 CA173636NCI NIH HHS U10 CA180827
6 · The paper itself

Abstract

t(8;21) is one of the most frequent chromosomal abnormalities observed in acute myeloid leukemia (AML). However, expression of AML1-ETO is not sufficient to induce transformation in vivo. Consistent with this observation, patients with this translocation harbor additional genetic abnormalities, suggesting a requirement for cooperating mutations. To better define the genetic landscape in AML and distinguish driver from passenger mutations, we compared the mutational profiles of AML1-ETO-driven mouse models of leukemia with the mutational profiles of human AML patients. We identified TET2 and PTPN11 mutations in both mouse and human AML and then demonstrated the ability of Tet2 loss and PTPN11 D61Y to initiate leukemogenesis in concert with expression of AML1-ETO in vivo. This integrative genetic profiling approach allowed us to accurately predict cooperating events in t(8;21)(+) AML in a robust and unbiased manner, while also revealing functional convergence in mouse and human AML.

Indexed as

AllelesEpistasis, GeneticAnimalsCell Transformation, NeoplasticChromosomes, Human, Pair 21Chromosomes, Human, Pair 8Core Binding Factor Alpha 2 SubunitDisease Models, AnimalGene Expression Regulation, LeukemicGene Knockout TechniquesGenomicsHumansLeukemia, Myeloid, AcuteMiceMutationOncogene Proteins, FusionAML1-ETO fusion protein, humanCore Binding Factor Alpha 2 SubunitOncogene Proteins, FusionProtein Tyrosine Phosphatase, Non-Receptor Type 11RUNX1 Translocation Partner 1 Protein

Identifiers

PMID26666262
PMCPMC4710200
OpenAlexW2215815605

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.