Evidence map›Paper›PMID 26664030›Full record

ArticleBioinformation2015

Design of a predicted MHC restricted short peptide immunodiagnostic and vaccine candidate for Fowl adenovirus C in chicken infection.

Hugo Valdivia-Olarte, David Requena, Manuel Ramirez, Luis E Saravia, Ray Izquierdo, Francesca Falconi-Agapito, Milagros Zavaleta, Iván Best, Manolo Fernández-Díaz, Mirko Zimic

Open access · hybridAbstract read
In one paragraph

Article in Bioinformation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  6. Designing a vaccine candidate against egg drop syndrome virus: anVeterinary research forum : an international quarterly journal · 2025
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  8. Multi-epitope Based Peptide Vaccine Candidate AgainstBioinformatics and biology insights · 2024
    Article
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  14. Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Hugo Valdivia-OlarteFarvet s.A.C. Carretera Panamericana Sur N° 766 Km 198.5, Chincha Alta. Ica - Peru ; Laboratorio de Bioinformática y Biologáa Molecular, Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofáa, Universidad Peruana Cayetano Heredia, Av. Honorio Delgado 430, San Martin de Porres. Lima - Peru.
David RequenaFarvet s.A.C. Carretera Panamericana Sur N° 766 Km 198.5, Chincha Alta. Ica - Peru ; Laboratorio de Bioinformática y Biologáa Molecular, Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofáa, Universidad Peruana Cayetano Heredia, Av. Honorio Delgado 430, San Martin de Porres. Lima - Peru.
Manuel RamirezFarvet s.A.C. Carretera Panamericana Sur N° 766 Km 198.5, Chincha Alta. Ica - Peru ; Laboratorio de Bioinformática y Biologáa Molecular, Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofáa, Universidad Peruana Cayetano Heredia, Av. Honorio Delgado 430, San Martin de Porres. Lima - Peru.
Luis E SaraviaFarvet s.A.C. Carretera Panamericana Sur N° 766 Km 198.5, Chincha Alta. Ica - Peru.
Ray IzquierdoFarvet s.A.C. Carretera Panamericana Sur N° 766 Km 198.5, Chincha Alta. Ica - Peru.
Francesca Falconi-AgapitoFarvet s.A.C. Carretera Panamericana Sur N° 766 Km 198.5, Chincha Alta. Ica - Peru.
Milagros ZavaletaFarvet s.A.C. Carretera Panamericana Sur N° 766 Km 198.5, Chincha Alta. Ica - Peru.
Iván BestFarvet s.A.C. Carretera Panamericana Sur N° 766 Km 198.5, Chincha Alta. Ica - Peru.
Manolo Fernández-DíazFarvet s.A.C. Carretera Panamericana Sur N° 766 Km 198.5, Chincha Alta. Ica - Peru.
Mirko ZimicFarvet s.A.C. Carretera Panamericana Sur N° 766 Km 198.5, Chincha Alta. Ica - Peru ; Laboratorio de Bioinformática y Biologáa Molecular, Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofáa, Universidad Peruana Cayetano Heredia, Av. Honorio Delgado 430, San Martin de Porres. Lima - Peru.
Farvet (Peru) · PEUniversidad Peruana Cayetano Heredia · PE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fowl adenoviruses (FAdVs) are the ethiologic agents of multiple pathologies in chicken. There are five different species of FAdVs grouped as FAdV-A, FAdV-B, FAdV-C, FAdV-D, and FAdV-E. It is of interest to develop immunodiagnostics and vaccine candidate for Peruvian FAdV-C in chicken infection using MHC restricted short peptide candidates. We sequenced the complete genome of one FAdV strain isolated from a chicken of a local farm. A total of 44 protein coding genes were identified in each genome. We sequenced twelve Cobb chicken MHC alleles from animals of different farms in the central coast of Peru, and subsequently determined three optimal human MHC-I and four optimal human MHC-II substitute alleles for MHC-peptide prediction. The potential MHC restricted short peptide epitope-like candidates were predicted using human specific (with determined suitable chicken substitutes) NetMHC MHC-peptide prediction model with web server features from all the FAdV genomes available. FAdV specific peptides with calculated binding values to known substituted chicken MHC-I and MHC-II were further filtered for diagnostics and potential vaccine epitopes. Promiscuity to the 3/4 optimal human MHC-I/II alleles and conservation among the available FAdV genomes was considered in this analysis. The localization on the surface of the protein was considered for class II predicted peptides. Thus, a set of class I and class II specific peptides from FAdV were reported in this study. Hence, a multiepitopic protein was built with these peptides, and subsequently tested to confirm the production of specific antibodies in chicken.

Identifiers

PMID26664030
PMCPMC4658644
OpenAlexW2260315444

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.