Evidence map›Paper›PMID 26662605›Full record

ArticlePlant physiology2016

Light and CO2/cAMP Signal Cross Talk on the Promoter Elements of Chloroplastic β-Carbonic Anhydrase Genes in the Marine Diatom Phaeodactylum tricornutum.

Atsushi Tanaka, Naoki Ohno, Kensuke Nakajima, Yusuke Matsuda

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  5. Article
  6. Review
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  8. Review
  9. Elucidation and genetic intervention of COJournal of biosciences · 2020
    Article
  10. Article
  11. Review
  12. Mechanisms of carbon dioxide acquisition and COPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  13. Article
  14. Systematic Analysis ofFrontiers in plant science · 2017
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Atsushi TanakaResearch Center for the Development of Intelligent Self-Organized Biomaterials, Research Center for Environmental Bioscience, and Department of Bioscience, Kwansei-Gakuin University, 2-1 Gakuen, Sanda, Hyogo, Japan, 669-1337.
Naoki OhnoResearch Center for the Development of Intelligent Self-Organized Biomaterials, Research Center for Environmental Bioscience, and Department of Bioscience, Kwansei-Gakuin University, 2-1 Gakuen, Sanda, Hyogo, Japan, 669-1337.
Kensuke NakajimaResearch Center for the Development of Intelligent Self-Organized Biomaterials, Research Center for Environmental Bioscience, and Department of Bioscience, Kwansei-Gakuin University, 2-1 Gakuen, Sanda, Hyogo, Japan, 669-1337.ORCID http://orcid.org/0000-0002-6134-6676
Yusuke MatsudaResearch Center for the Development of Intelligent Self-Organized Biomaterials, Research Center for Environmental Bioscience, and Department of Bioscience, Kwansei-Gakuin University, 2-1 Gakuen, Sanda, Hyogo, Japan, 669-1337 yusuke@kwansei.ac.jp.ORCID http://orcid.org/0000-0002-1892-4397
Kwansei Gakuin University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our previous study showed that three CO2/cAMP-responsive elements (CCRE) CCRE1, CCRE2, and CCRE3 in the promoter of the chloroplastic β-carbonic anhydrase 1 gene in the marine diatom Phaeodactylum tricornutum (Pptca1) were critical for the cAMP-mediated transcriptional response to ambient CO2 concentration. Pptca1 was activated under CO2 limitation, but the absence of light partially disabled this low-CO2-triggered transcriptional activation. This suppression effect disappeared when CCRE2 or two of three CCREs were replaced with a NotI restriction site, strongly suggesting that light signal cross-talks with CO2 on the cAMP-signal transduction pathway that targets CCREs. The paralogous chloroplastic carbonic anhydrase gene, ptca2 was also CO2/cAMP-responsive. The upstream truncation assay of the ptca2 promoter (Pptca2) revealed a short sequence of -367 to -333 relative to the transcription-start site to be a critical regulatory region for the CO2 and light responses. This core-regulatory region comprises one CCRE1 and two CCRE2 sequences. Further detailed analysis of Pptca2 clearly indicates that two CCRE2s are the cis-element governing the CO2/light response of Pptca2. The transcriptional activation of two Pptcas in CO2 limitation was evident under illumination with a photosynthetically active light wavelength, and an artificial electron acceptor from the reduction side of PSI efficiently inhibited Pptcas activation, while neither inhibition of the linear electron transport from PSII to PSI nor inhibition of ATP synthesis showed an effect on the promoter activity, strongly suggesting a specific involvement of the redox level of the stromal side of the PSI in the CO2/light cross talk.

Indexed as

LightPromoter Regions, GeneticAdenosine TriphosphateAquatic OrganismsBase SequenceBiological AssayCarbon DioxideCarbonic AnhydrasesDiatomsGene Expression Regulation, PlantGlucuronidasePhotosystem II Protein ComplexPhotosystem I Protein ComplexRNA, MessengerAdenosine TriphosphateCarbon DioxideCarbonic AnhydrasesGlucuronidasePhotosystem II Protein ComplexPhotosystem I Protein ComplexRNA, Messenger

Identifiers

PMID26662605
PMCPMC4734587
OpenAlexW2190663004

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.