Evidence map›Paper›PMID 26660678›Full record

ArticlePloS one2015

Retroviral DNA Sequences as a Means for Determining Ancient Diets.

Jessica I Rivera-Perez, Raul J Cano, Yvonne Narganes-Storde, Luis Chanlatte-Baik, Gary A Toranzos

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Origin of the New World Plasmodium vivax: Facts and New Approaches.International microbiology : the official journal of the Spanish Society for Microbiology · 2019
    Article
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  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jessica I Rivera-PerezDepartment of Biology, University of Puerto Rico, Rio Piedras Campus, San Juan, Puerto Rico.
Raul J CanoCenter for Applications in Biotechnology, Biological Sciences Department, California Polytechnic State University, San Luis Obispo, California, United States of America.
Yvonne Narganes-StordeCenter for Archaeological Research, University of Puerto Rico, Rio Piedras Campus, San Juan, Puerto Rico.
Luis Chanlatte-BaikCenter for Archaeological Research, University of Puerto Rico, Rio Piedras Campus, San Juan, Puerto Rico.
Gary A ToranzosDepartment of Biology, University of Puerto Rico, Rio Piedras Campus, San Juan, Puerto Rico.
University of Puerto Rico at Río Piedras · PRCalifornia Polytechnic State University · US

Funding

Upgrade Laboratories Facilities at UPR-Rio PiedrasR25GM061151 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 2001 to 2023
$32.5M
NIGMS NIH HHS R25 GM061151
6 · The paper itself

Abstract

For ages, specialists from varying fields have studied the diets of the primeval inhabitants of our planet, detecting diet remains in archaeological specimens using a range of morphological and biochemical methods. As of recent, metagenomic ancient DNA studies have allowed for the comparison of the fecal and gut microbiomes associated to archaeological specimens from various regions of the world; however the complex dynamics represented in those microbial communities still remain unclear. Theoretically, similar to eukaryote DNA the presence of genes from key microbes or enzymes, as well as the presence of DNA from viruses specific to key organisms, may suggest the ingestion of specific diet components. In this study we demonstrate that ancient virus DNA obtained from coprolites also provides information reconstructing the host's diet, as inferred from sequences obtained from pre-Columbian coprolites. This depicts a novel and reliable approach to determine new components as well as validate the previously suggested diets of extinct cultures and animals. Furthermore, to our knowledge this represents the first description of the eukaryotic viral diversity found in paleofaeces belonging to pre-Columbian cultures.

Indexed as

DietAnimalsDNA, ViralFecesFossilsHumansMetagenomicsRetroviridaeSequence Analysis, DNADNA, Viral

Identifiers

PMID26660678
PMCPMC4682816
OpenAlexW2230545752

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.