Evidence map›Paper›PMID 26659815›Full record

ArticleBritish journal of haematology2016

Clonal architecture of CXCR4 WHIM-like mutations in Waldenström Macroglobulinaemia.

Lian Xu, Zachary R Hunter, Nicholas Tsakmaklis, Yang Cao, Guang Yang, Jie Chen, Xia Liu, Sandra Kanan, Jorge J Castillo, Yu-Tzu Tai and 16 more

Abstract read
In one paragraph

Article in British journal of haematology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 135 citations in OpenAlex.

  1. Venetoclax in Previously Treated Waldenström Macroglobulinemia.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2022
    Trial
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  5. Detection of the MYD88Annals of hematology · 2020
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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 8 institutions in 2 countries.

Lian XuBing Center for Waldenström's Macroglobulinemia, Dana Farber Cancer Institute, Boston, MA, USA.
Zachary R HunterBing Center for Waldenström's Macroglobulinemia, Dana Farber Cancer Institute, Boston, MA, USA.
Nicholas TsakmaklisBing Center for Waldenström's Macroglobulinemia, Dana Farber Cancer Institute, Boston, MA, USA.
Yang CaoBing Center for Waldenström's Macroglobulinemia, Dana Farber Cancer Institute, Boston, MA, USA.
Guang YangBing Center for Waldenström's Macroglobulinemia, Dana Farber Cancer Institute, Boston, MA, USA.
Jie ChenBing Center for Waldenström's Macroglobulinemia, Dana Farber Cancer Institute, Boston, MA, USA.
Xia LiuBing Center for Waldenström's Macroglobulinemia, Dana Farber Cancer Institute, Boston, MA, USA.
Sandra KananBing Center for Waldenström's Macroglobulinemia, Dana Farber Cancer Institute, Boston, MA, USA.
Jorge J CastilloBing Center for Waldenström's Macroglobulinemia, Dana Farber Cancer Institute, Boston, MA, USA.
Yu-Tzu TaiDepartment of Medicine, Harvard Medical School, Boston, MA, USA.
James L ZehnderDepartment of Pathology, Stanford University Medical Center, Stanford, CA, USA.
Jennifer R BrownDepartment of Medicine, Harvard Medical School, Boston, MA, USA.
Ruben D CarrascoDepartment of Medicine, Harvard Medical School, Boston, MA, USA.
Ranjana AdvaniDepartment of Medical Oncology, Stanford University Medical Center, Stanford, CA, USA.
Jean M SabileDepartment of Medical Oncology, Stanford University Medical Center, Stanford, CA, USA.
Kimon ArgyropoulosDepartment of Medical Oncology, Memorial Sloane Kettering Cancer Center, New York, NY, USA.
M Lia PalombaDepartment of Medical Oncology, Memorial Sloane Kettering Cancer Center, New York, NY, USA.
Enrica MorraHaematology Unit, Niguarda Hospital, Milan, Italy.
Alessandra TrojaniHaematology Unit, Niguarda Hospital, Milan, Italy.
Antonino GrecoHaematology Unit, Niguarda Hospital, Milan, Italy.
Alessandra TedeschiHaematology Unit, Niguarda Hospital, Milan, Italy.
Marzia VarettoniDepartment of Molecular Medicine, University of Pavia, Pavia, Italy.
Luca ArcainiDepartment of Molecular Medicine, University of Pavia, Pavia, Italy.
Nikhil M MunshiDepartment of Medicine, Harvard Medical School, Boston, MA, USA.
Kenneth C AndersonDepartment of Medicine, Harvard Medical School, Boston, MA, USA.
Steven P TreonBing Center for Waldenström's Macroglobulinemia, Dana Farber Cancer Institute, Boston, MA, USA.
Dana-Farber Cancer Institute · USHarvard University · USAzienda Socio Sanitaria Territoriale Grande Ospedale Metropolitano Niguarda · ITMemorial Sloan Kettering Cancer Center · USStanford Medicine · USPoliclinico San Matteo Fondazione · ITStanford University · USUniversity of Pavia · IT

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
TUMOR SPECIFIC CYTOTOXIC T-LYMPHOCYTES IN BONE MARROW TRANSPLANTATIONP01CA049605 · NCI · STANFORD UNIVERSITY · PI David B. Miklos · 1989 to 2026
$73.3M
Trageting the Multiple Myeloma EpigenomeP50CA100707 · NCI · DANA-FARBER CANCER INSTITUTE · PI ANDERSON, KENNETH C., MUNSHI, NIKHIL C. · 2003 to 2023
$45.0M
Targeting Genomic Instability and Evolution in MyelomaP01CA155258 · NCI · DANA-FARBER CANCER INST · PI Jill Corre · 2011 to 2026
$32.5M
NCI NIH HHS P01 CA049605NCI NIH HHS P01 CA155258NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA100707NCI NIH HHS P50CA100707
6 · The paper itself

Abstract

CXCR4(WHIM) somatic mutations are distinctive to Waldenström Macroglobulinaemia (WM), and impact disease presentation and treatment outcome. The clonal architecture of CXCR4(WHIM) mutations remains to be delineated. We developed highly sensitive allele-specific polymerase chain reaction (AS-PCR) assays for detecting the most common CXCR4(WHIM) mutations (CXCR4(S338X C>A and C>G) ) in WM. The AS-PCR assays detected CXCR4(S338X) mutations in WM and IgM monoclonal gammopathy of unknown significance (MGUS) patients not revealed by Sanger sequencing. By combined AS-PCR and Sanger sequencing, CXCR4(WHIM) mutations were identified in 44/102 (43%), 21/62 (34%), 2/12 (17%) and 1/20 (5%) untreated WM, previously treated WM, IgM MGUS and marginal zone lymphoma patients, respectively, but no chronic lymphocytic leukaemia, multiple myeloma, non-IgM MGUS patients or healthy donors. Cancer cell fraction analysis in WM and IgM MGUS patients showed CXCR4(S338X) mutations were primarily subclonal, with highly variable clonal distribution (median 35·1%, range 1·2-97·5%). Combined AS-PCR and Sanger sequencing revealed multiple CXCR4(WHIM) mutations in many individual WM patients, including homozygous and compound heterozygous mutations validated by deep RNA sequencing. The findings show that CXCR4(WHIM) mutations are more common in WM than previously revealed, and are primarily subclonal, supporting their acquisition after MYD88(L265P) in WM oncogenesis. The presence of multiple CXCR4(WHIM) mutations within individual WM patients may be indicative of targeted CXCR4 genomic instability.

Indexed as

MutationAdultAgedAged, 80 and overAmino Acid SubstitutionFemaleGenomic InstabilityHumansImmunoglobulin MLymphoma, B-Cell, Marginal ZoneMaleMiddle AgedMonoclonal Gammopathy of Undetermined SignificanceMyeloid Differentiation Factor 88Polymerase Chain ReactionReceptors, CXCR4CXCR4 protein, humanImmunoglobulin MMYD88 protein, humanMyeloid Differentiation Factor 88Receptors, CXCR4CXCR4IgM MGUSMarginal Zone LymphomaMYD88 L265PWaldenström macroglobulinaemiaWHIM

Identifiers

PMID26659815
PMCPMC5409813
OpenAlexW2194688567

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.