Evidence map›Paper›PMID 26659409›Full record

ArticlePloS one2015

A Sulfated Glycosaminoglycan Linkage Region is a Novel Type of Human Natural Killer-1 (HNK-1) Epitope Expressed on Aggrecan in Perineuronal Nets.

Keiko Yabuno, Jyoji Morise, Yasuhiko Kizuka, Noritaka Hashii, Nana Kawasaki, Satoru Takahashi, Shinji Miyata, Tomomi Izumikawa, Hiroshi Kitagawa, Hiromu Takematsu and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  11. Article
  12. Article
  13. Proteins Binding to the Carbohydrate HNK-1: Common Origins?International journal of molecular sciences · 2021
    Article
  14. Neural glycomics: the sweet side of nervous system functions.Cellular and molecular life sciences : CMLS · 2021
    Review
  15. Chromoanasynthesis as a cause of Jacobsen syndrome.American journal of medical genetics. Part A · 2020
    Article
  16. Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Keiko YabunoDepartment of Biological Chemistry, Human Health Sciences, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Jyoji MoriseDepartment of Biological Chemistry, Human Health Sciences, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Yasuhiko KizukaDepartment of Biological Chemistry, Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto, 606-8501, Japan.
Noritaka HashiiDivision of Biological Chemistry and Biologicals, National Institute of Health Sciences, Tokyo, 158-8501, Japan.
Nana KawasakiDivision of Biological Chemistry and Biologicals, National Institute of Health Sciences, Tokyo, 158-8501, Japan.
Satoru TakahashiDepartment of Anatomy and Embryology Faculty of Medicine University of Tsukuba, Tsukuba, 305-8575, Japan.
Shinji MiyataDepartment of Biochemistry, Kobe Pharmaceutical University, Kobe, 658-8558, Japan.
Tomomi IzumikawaDepartment of Biochemistry, Kobe Pharmaceutical University, Kobe, 658-8558, Japan.
Hiroshi KitagawaDepartment of Biochemistry, Kobe Pharmaceutical University, Kobe, 658-8558, Japan.
Hiromu TakematsuDepartment of Biological Chemistry, Human Health Sciences, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Shogo OkaDepartment of Biological Chemistry, Human Health Sciences, Graduate School of Medicine, Kyoto University, Kyoto, 606-8507, Japan.
Kyoto University · JPKobe Pharmaceutical University · JPNational Institute of Health Sciences · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human natural killer-1 (HNK-1) carbohydrate (HSO3-3GlcAβ1-3Galβ1-4GlcNAc-R) is highly expressed in the brain and required for learning and neural plasticity. We previously demonstrated that expression of the HNK-1 epitope is mostly abolished in knockout mice for GlcAT-P (B3gat1), a major glucuronyltransferase required for HNK-1 biosynthesis, but remained in specific regions such as perineuronal nets (PNNs) in these mutant mice. Considering PNNs are mainly composed of chondroitin sulfate proteoglycans (CSPGs) and regulate neural plasticity, GlcAT-P-independent expression of HNK-1 in PNNs is suggested to play a role in neural plasticity. However, the function, structure, carrier glycoprotein and biosynthetic pathway for GlcAT-P-irrelevant HNK-1 epitope remain unclear. In this study, we identified a unique HNK-1 structure on aggrecan in PNNs. To determine the biosynthetic pathway for the novel HNK-1, we generated knockout mice for GlcAT-S (B3gat2), the other glucuronyltransferase required for HNK-1 biosynthesis. However, GlcAT-P and GlcAT-S double-knockout mice did not exhibit reduced HNK-1 expression compared with single GlcAT-P-knockout mice, indicating an unusual biosynthetic pathway for the HNK-1 epitope in PNNs. Aggrecan was purified from cultured cells in which GlcAT-P and -S are not expressed and we determined the structure of the novel HNK-1 epitope using liquid chromatography/mass spectrometry (LC/MS) as a sulfated linkage region of glycosaminoglycans (GAGs), HSO3-GlcA-Gal-Gal-Xyl-R. Taken together, we propose a hypothetical model where GlcAT-I, the sole glucuronyltransferase required for synthesis of the GAG linkage, is also responsible for biosynthesis of the novel HNK-1 on aggrecan. These results could lead to discovery of new roles of the HNK-1 epitope in neural plasticity.

Indexed as

AggrecansAnimalsBlotting, WesternCD57 AntigensChlorocebus aethiopsChondroitin Sulfate ProteoglycansChromatography, LiquidCOS CellsEpitopesGlycosaminoglycansGlycosyltransferasesMass SpectrometryMice, KnockoutMicroscopy, ConfocalNerve NetNeuronal PlasticityA73025AggrecansB3glct protein, mouseCD57 AntigensChondroitin Sulfate ProteoglycansEpitopesGlycosaminoglycansGlycosyltransferases

Identifiers

PMID26659409
PMCPMC4686076
OpenAlexW2202599401

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.