Evidence map›Paper›PMID 26659249›Full record

ArticleMolecular biology and evolution2016

Evolutionary Conservation of a GPCR-Independent Mechanism of Trimeric G Protein Activation.

Brantley D Coleman, Arthur Marivin, Kshitij Parag-Sharma, Vincent DiGiacomo, Seongseop Kim, Judy S Pepper, Jason Casler, Lien T Nguyen, Michael R Koelle, Mikel Garcia-Marcos

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Regulating cellular cyclic adenosine monophosphate: "Sources," "sinks," and now, "tunable valves".Wiley interdisciplinary reviews. Systems biology and medicine · 2020
    Review
  11. Article
  12. Ric-8A, a GEF, and a Chaperone for G Protein α-Subunits: Evidence for the Two-Faced Interface.BioEssays : news and reviews in molecular, cellular and developmental biology · 2020
    Article
  13. DAPLE protein inhibits nucleotide exchange on GαThe Journal of biological chemistry · 2020
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Specific inhibition of GPCR-independent G protein signaling by a rationally engineered protein.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Brantley D ColemanDepartment of Biochemistry, Boston University School of Medicine.
Arthur MarivinDepartment of Biochemistry, Boston University School of Medicine.
Kshitij Parag-SharmaDepartment of Biochemistry, Boston University School of Medicine.
Vincent DiGiacomoDepartment of Biochemistry, Boston University School of Medicine.
Seongseop KimDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine.
Judy S PepperDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine.
Jason CaslerDepartment of Biochemistry, Boston University School of Medicine.
Lien T NguyenDepartment of Biochemistry, Boston University School of Medicine.
Michael R KoelleDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine.
Mikel Garcia-MarcosDepartment of Biochemistry, Boston University School of Medicine mgm1@bu.edu.
University School · USBoston University · USYale University · US

Funding

G PROTEIN SIGNALING IN THE C ELEGANS NERVOUS SYSTEMR01NS036918 · NINDS · YALE UNIVERSITY · PI KOELLE, MICHAEL R · 1998 to 2019
$8.0M
Alternative mechanisms of signaling via trimeric G proteinsR01GM108733 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI GARCIA-MARCOS, MIKEL · 2014 to 2018
$1.6M
NIGMS NIH HHS R01 GM108733NIGMS NIH HHS R01GM108733NINDS NIH HHS R01 NS036918NINDS NIH HHS R01NS036918
6 · The paper itself

Abstract

Trimeric G protein signaling is a fundamental mechanism of cellular communication in eukaryotes. The core of this mechanism consists of activation of G proteins by the guanine-nucleotide exchange factor (GEF) activity of G protein coupled receptors. However, the duration and amplitude of G protein-mediated signaling are controlled by a complex network of accessory proteins that appeared and diversified during evolution. Among them, nonreceptor proteins with GEF activity are the least characterized. We recently found that proteins of the ccdc88 family possess a Gα-binding and activating (GBA) motif that confers GEF activity and regulates mammalian cell behavior. A sequence similarity-based search revealed that ccdc88 genes are highly conserved across metazoa but the GBA motif is absent in most invertebrates. This prompted us to investigate whether the GBA motif is present in other nonreceptor proteins in invertebrates. An unbiased bioinformatics search in Caenorhabditis elegans identified GBAS-1 (GBA and SPK domain containing-1) as a GBA motif-containing protein with homologs only in closely related worm species. We demonstrate that GBAS-1 has GEF activity for the nematode G protein GOA-1 and that the two proteins are coexpressed in many cells of living worms. Furthermore, we show that GBAS-1 can activate mammalian Gα-subunits and provide structural insights into the evolutionarily conserved determinants of the GBA-G protein interface. These results demonstrate that the GBA motif is a functional GEF module conserved among highly divergent proteins across evolution, indicating that the GBA-Gα binding mode is strongly constrained under selective pressure to mediate receptor-independent G protein activation in metazoans.

Indexed as

Biological EvolutionProtein MultimerizationAmino Acid MotifsAmino Acid SequenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsEvolution, MolecularGene ExpressionGTP-Binding ProteinsGuanine Nucleotide Exchange FactorsModels, MolecularProtein BindingProtein ConformationProtein Interaction Domains and MotifsReceptors, G-Protein-CoupledCaenorhabditis elegans ProteinsGTP-Binding ProteinsGuanine Nucleotide Exchange FactorsReceptors, G-Protein-CoupledC. elegansDAPLEGirdinGOA-1Ric-8

Identifiers

PMID26659249
PMCPMC4760084
OpenAlexW2211002105

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.