Evidence map›Paper›PMID 26658849›Full record

ArticleScientific reports2015

No association between HPV positive breast cancer and expression of human papilloma viral transcripts.

Orla M Gannon, Annika Antonsson, Michael Milevskiy, Melissa A Brown, Nicholas A Saunders, Ian C Bennett

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 3 pooled it
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 3 syntheses or guidelines pooled it, 33 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Review
  6. Article
  7. Review
  8. The viral origins of breast cancer.Infectious agents and cancer · 2024
    Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. HPV-Associated Breast Cancer: Myth or Fact?Pathogens (Basel, Switzerland) · 2022
    Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Low Prevalence of Human Papilloma Virus in Patients with Breast Cancer, Kerman; IranAsian Pacific journal of cancer prevention : APJCP · 2018
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Orla M GannonThe University of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Brisbane, QLD.
Annika AntonssonDepartment of Population Health, QIMR Berghofer Medical Research Institute, Herston, QLD.
Michael MilevskiySchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD.
Melissa A BrownSchool of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD.
Nicholas A SaundersThe University of Queensland Diamantina Institute, The University of Queensland, Translational Research Institute, Brisbane, QLD.
Ian C BennettPrincess Alexandra Hospital, University of Queensland Department of Surgery, Brisbane, QLD.
University of Queensland · AUQIMR Berghofer Medical Research Institute · AUTranslational Research Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infectious agents are thought to be responsible for approximately 16% of cancers worldwide, however there are mixed reports in the literature as to the prevalence and potential pathogenicity of viruses in breast cancer. Furthermore, most studies to date have focused primarily on viral DNA rather than the expression of viral transcripts. We screened a large cohort of fresh frozen breast cancer and normal breast tissue specimens collected from patients in Australia for the presence of human papilloma virus (HPV) DNA, with an overall prevalence of HPV of 16% and 10% in malignant and non-malignant tissue respectively. Samples that were positive for HPV DNA by nested PCR were screened by RNA-sequencing for the presence of transcripts of viral origin, using three different bioinformatic pipelines. We did not find any evidence for HPV or other viral transcripts in HPV DNA positive samples. In addition, we also screened publicly available breast RNA-seq data sets for the presence of viral transcripts and did not find any evidence for the expression of viral transcripts (HPV or otherwise) in other data sets. This data suggests that transcription of viral genomes is unlikely to be a significant factor in breast cancer pathogenesis.

Indexed as

Transcription, GeneticAdultAgedAged, 80 and overBreast NeoplasmsDNA, ViralFemaleGene Expression Regulation, ViralHeLa CellsHost-Pathogen InteractionsHumansMiddle AgedPapillomaviridaePapillomavirus InfectionsPolymerase Chain ReactionRNA, ViralDNA, ViralRNA, Viral

Identifiers

PMID26658849
PMCPMC4677295
OpenAlexW2344964246

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.