Evidence map›Paper›PMID 26658609›Full record

ArticleMolecular biology of the cell2016

The alternate AP-1 adaptor subunit Apm2 interacts with the Mil1 regulatory protein and confers differential cargo sorting.

Shawn T Whitfield, Helen E Burston, Björn D M Bean, Nandini Raghuram, Lymarie Maldonado-Báez, Michael Davey, Beverly Wendland, Elizabeth Conibear

RetractedErratum issuedOpen access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  5. Chitin Synthesis in Yeast: A Matter of Trafficking.International journal of molecular sciences · 2022
    Review
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  7. Review
  8. Exomer complex regulates protein traffic at the TGN through differential interactions with cargos and clathrin adaptor complexes.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Natural variation of chronological aging in theNPJ aging and mechanisms of disease · 2018
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Shawn T WhitfieldCentre for Molecular Medicine and Therapeutics, Child and Family Research Institute, Vancouver, University of British Columbia, Vancouver, BC V5Z 4H4, Canada Department of Biochemistry and Molecular Biology and Department of Medical Genetics, Faculty of Medicine, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.
Helen E BurstonCentre for Molecular Medicine and Therapeutics, Child and Family Research Institute, Vancouver, University of British Columbia, Vancouver, BC V5Z 4H4, Canada Department of Biochemistry and Molecular Biology and Department of Medical Genetics, Faculty of Medicine, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.
Björn D M BeanCentre for Molecular Medicine and Therapeutics, Child and Family Research Institute, Vancouver, University of British Columbia, Vancouver, BC V5Z 4H4, Canada Department of Biochemistry and Molecular Biology and Department of Medical Genetics, Faculty of Medicine, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.
Nandini RaghuramCentre for Molecular Medicine and Therapeutics, Child and Family Research Institute, Vancouver, University of British Columbia, Vancouver, BC V5Z 4H4, Canada.
Lymarie Maldonado-BáezDepartment of Biology, Johns Hopkins University, Baltimore, MD 21218-2685.
Michael DaveyCentre for Molecular Medicine and Therapeutics, Child and Family Research Institute, Vancouver, University of British Columbia, Vancouver, BC V5Z 4H4, Canada.
Beverly WendlandDepartment of Biology, Johns Hopkins University, Baltimore, MD 21218-2685.
Elizabeth ConibearCentre for Molecular Medicine and Therapeutics, Child and Family Research Institute, Vancouver, University of British Columbia, Vancouver, BC V5Z 4H4, Canada Department of Biochemistry and Molecular Biology and Department of Medical Genetics, Faculty of Medicine, University of British Columbia, Vancouver, BC V6T 1Z3, Canada conibear@cmmt.ubc.ca.
University of British Columbia · CAJohns Hopkins University · US

Funding

MOLECULAR ANALYSIS OF ENDOCYTOSIS PROTEINS IN YEASTR01GM060979 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI WENDLAND, BEVERLY R · 2000 to 2013
$4.3M
NIGMS NIH HHS R01 GM060979NIGMS NIH HHS R01 GM-60979
6 · The paper itself

Abstract

Heterotetrameric adaptor protein complexes are important mediators of cargo protein sorting in clathrin-coated vesicles. The cell type-specific expression of alternate μ chains creates distinct forms of AP-1 with altered cargo sorting, but how these subunits confer differential function is unclear. Whereas some studies suggest the μ subunits specify localization to different cellular compartments, others find that the two forms of AP-1 are present in the same vesicle but recognize different cargo. Yeast have two forms of AP-1, which differ only in the μ chain. Here we show that the variant μ chain Apm2 confers distinct cargo-sorting functions. Loss of Apm2, but not of Apm1, increases cell surface levels of the v-SNARE Snc1. However, Apm2 is unable to replace Apm1 in sorting Chs3, which requires a dileucine motif recognized by the γ/σ subunits common to both complexes. Apm2 and Apm1 colocalize at Golgi/early endosomes, suggesting that they do not associate with distinct compartments. We identified a novel, conserved regulatory protein that is required for Apm2-dependent sorting events. Mil1 is a predicted lipase that binds Apm2 but not Apm1 and contributes to its membrane recruitment. Interactions with specific regulatory factors may provide a general mechanism to diversify the functional repertoire of clathrin adaptor complexes.

Indexed as

Adaptor Protein Complex 1Adaptor Protein Complex mu SubunitsAmino Acid SequenceCatalytic DomainEndosomesGolgi ApparatusLipaseMolecular Sequence DataProtein BindingProtein Interaction Domains and MotifsProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTyrosineAdaptor Protein Complex 1Adaptor Protein Complex mu SubunitsAPM2 protein, S cerevisiaeLipaseMil1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTyrosine

Identifiers

PMID26658609
PMCPMC4751606
OpenAlexW2287403443

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.