Evidence map›Paper›PMID 26657107›Full record

ReviewPathogens and disease2016

tRNAs taking charge.

Jonathan W Cruz, Nancy A Woychik

Open access · hybridAbstract readReview
In one paragraph

Review in Pathogens and disease, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Benefits of Toxicity:Microorganisms · 2023
    Article
  6. Article
  7. Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Review
  9. Article
  10. The tRNA biology · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jonathan W CruzDepartment of Biochemistry and Molecular Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA.
Nancy A WoychikDepartment of Biochemistry and Molecular Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA nancy.woychik@rutgers.edu.
Johnson University · US

Funding

VIRUS-HOST INTERACTIONS IN EUKARYOTIC CELLST32AI007403 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI BREWER, GARY A. · 1991 to 2014
$1.7M
Membrane Protein Production Using the Yeast SPP SystemR01GM095693 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI WOYCHIK, NANCY ANN · 2010 to 2013
$1.3M
Functional Dissection of Toxin-Antitoxin Systems in Mycobacterium tuberculosisR21AI072399 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI WOYCHIK, NANCY ANN · 2009 to 2010
$463k
NIAID NIH HHS R21 AI072399NIAID NIH HHS T32 AI007403NIGMS NIH HHS R01 GM095693
6 · The paper itself

Abstract

Most bacterial toxins derived from chromosomally encoded toxin-antitoxin (TA) systems that have been studied to date appear to protect cells from relatively short pulses of stress by triggering a reversible state of growth arrest. In contrast to many bacterial toxins that are produced as defense mechanisms and secreted from their hosts, TA toxins exert their protective effect from within the cell that produces them. TA toxin-mediated growth arrest is most frequently achieved through their ability to selectively cleave RNA species that participate in protein synthesis. Until very recently, it was thought that the primary conduit for toxin-mediated translation inhibition was cleavage of a single class of RNA, mRNA, thus depleting transcripts and precluding production of essential proteins. This minireview focuses on how the development and implementation of a specialized RNA-seq method to study Mycobacterium tuberculosis TA systems enabled the identification of unexpected RNA targets for toxins, i.e. a handful of tRNAs that are cleaved into tRNA halves. Our result brings to light a new perspective on how these toxins may act in this pathogen and uncovers a striking parallel to signature features of the eukaryotic stress response.

Indexed as

AnimalsAntitoxinsBacterial ToxinsColicinsGene Expression Regulation, BacterialHumansInverted Repeat SequencesMycobacterium tuberculosisNucleic Acid ConformationRibonuclease, PancreaticRNA, BacterialRNA, TransferSequence Analysis, RNAStress, PhysiologicalTuberculosisangiogeninAntitoxinsBacterial ToxinsColicinsRibonuclease, PancreaticRNA, BacterialRNA, TransferangiogeninantitoxinRny1toxintranslation inhibitionVapC

Identifiers

PMID26657107
PMCPMC4705866
OpenAlexW2306686856

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.