Evidence map›Paper›PMID 26656885›Full record

ArticleDatabase : the journal of biological databases and curation2015

Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics.

Junyang Yue, Jian Liu, Rongjun Ban, Wei Tang, Lin Deng, Zhangjun Fei, Yongsheng Liu

Open access · goldAbstract readComparative Study
In one paragraph

Article in Database : the journal of biological databases and curation, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

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  6. Novel insight into ferroptosis-related genes, molecular subtypes, and immune characteristics in intracranial aneurysms.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2022
    Article
  7. Identification ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
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  15. PCPPI: a comprehensive database for the prediction of Penicillium-crop protein-protein interactions.Database : the journal of biological databases and curation · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Junyang YueSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China.
Jian LiuSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China.
Rongjun BanSchool of Information Science and Technology, University of Science and Technology of China, Hefei 230009, China.
Wei TangSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China.
Lin DengInformation and Network Center, Hefei University of Technology, Hefei 230009, China.
Zhangjun FeiBoyce Thompson Institute for Plant Research and USDA-ARS Robert W. Holley Center, Tower Road, Cornell University Campus, Ithaca, NY 14853, USA and.
Yongsheng LiuSchool of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, China, Ministry of Education Key Laboratory for Bio-Resource and Eco-Environment, College of Life Science and State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu 610064, China liuyongsheng1122@hfut.edu.cn.
Hefei University of Technology · CNCornell University · USSichuan University · CNUniversity of Science and Technology of China · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Kiwifruit Information Resource (KIR) is dedicated to maintain and integrate comprehensive datasets on genomics, functional genomics and transcriptomics of kiwifruit (Actinidiaceae). KIR serves as a central access point for existing/new genomic and genetic data. KIR also provides researchers with a variety of visualization and analysis tools. Current developments include the updated genome structure of Actinidia chinensis cv. Hongyang and its newest genome annotation, putative transcripts, gene expression, physical markers of genetic traits as well as relevant publications based on the latest genome assembly. Nine thousand five hundred and forty-seven new transcripts are detected and 21 132 old transcripts are changed. At the present release, the next-generation transcriptome sequencing data has been incorporated into gene models and splice variants. Protein-protein interactions are also identified based on experimentally determined orthologous interactions. Furthermore, the experimental results reported in peer-reviewed literature are manually extracted and integrated within a well-developed query page. In total, 122 identifications are currently associated, including commonly used gene names and symbols. All KIR datasets are helpful to facilitate a broad range of kiwifruit research topics and freely available to the research community. Database URL: http://bdg.hfut.edu.cn/kir/index.html.

Indexed as

Genome, PlantGenomicsActinidiaChromosomes, PlantDatabases, GeneticExpressed Sequence TagsFruitSearch EngineSequence Homology, Nucleic AcidUser-Computer Interface

Identifiers

PMID26656885
PMCPMC4674624
OpenAlexW2294361252

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.