Evidence map›Paper›PMID 26655851›Full record

ArticleScientific reports2015

Uncovering MicroRNA Regulatory Hubs that Modulate Plasma Cell Differentiation.

Dong-Yan Tsai, Kuo-Hsuan Hung, I-Ying Lin, Shin-Tang Su, Shih-Ying Wu, Cheng-Han Chung, Tong-Cheng Wang, Wen-Hsiung Li, Arthur Chun-Chieh Shih, Kuo-I Lin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Dong-Yan TsaiGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Kuo-Hsuan HungGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
I-Ying LinGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Shin-Tang SuGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Shih-Ying WuInstitute of Information Science, Academia Sinica, Taipei 115, Taiwan.
Cheng-Han ChungGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Tong-Cheng WangGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Wen-Hsiung LiGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Arthur Chun-Chieh ShihInstitute of Information Science, Academia Sinica, Taipei 115, Taiwan.
Kuo-I LinGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Genomics Research Center, Academia Sinica · TWInstitute of Information Science, Academia Sinica · TWNational Yang Ming Chiao Tung University · TWNational Yang Ming Chiao Tung University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using genome-wide approaches, we studied the microRNA (miRNA) expression profile during human plasma cell (PC) differentiation induced by stimulation of human blood B cells with T follicular helper cell-dependent signals. Combining the profiles of differentially expressed genes in PC differentiation with gene ontology (GO) analysis revealed that a significant group of genes involved in the transcription factor (TF) activity was preferentially changed. We thus focused on studying the effects of differentially expressed miRNAs on several key TFs in PC differentiation. Cohorts of differentially expressed miRNAs cooperating as miRNA hubs were predicted and validated to modulate key TFs, including a down-regulated miRNA hub containing miR-101-3p, -125b-5p, and -223-3p contributing to induction of PRDM1 as well as an up-regulated miRNA hub containing miR-34a-5p, -148a-3p, and -183-5p suppressing BCL6, BACH2, and FOXP1. Induced expression of NF-κB and PRDM1 during PC differentiation controlled the expression of up- and down-regulated miRNA hubs, respectively. Co-expression of miR-101-3p, -125b-5p, and -223-3p in stimulated B cells showed synergistic effects on inhibition of PC formation, which can be rescued by re-introduction of PRDM1. Together, we catalogue the complex roadmap of miRNAs and their functional interplay in collaboratively directing PC differentiation.

Indexed as

Gene Expression RegulationGene Regulatory NetworksCell DifferentiationComputational BiologyGene Expression ProfilingHealthy VolunteersHumansMicroRNAsMultigene FamilyNF-kappa BPlasma CellsPositive Regulatory Domain I-Binding Factor 1Repressor ProteinsTranscription FactorsTranscriptomeMicroRNAsNF-kappa BPositive Regulatory Domain I-Binding Factor 1PRDM1 protein, humanRepressor ProteinsTranscription Factors

Identifiers

PMID26655851
PMCPMC4675970
OpenAlexW2296454065

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.