Evidence map›Paper›PMID 26655764›Full record

ArticleApplied and environmental microbiology2016

Markerless Gene Deletion with Cytosine Deaminase in Thermus thermophilus Strain HB27.

Lei Wang, Jana Hoffmann, Hildegard Watzlawick, Josef Altenbuchner

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Lei WangInstitut für Industrielle Genetik, Universität Stuttgart, Stuttgart, Germany.
Jana HoffmannInstitut für Industrielle Genetik, Universität Stuttgart, Stuttgart, Germany.
Hildegard WatzlawickInstitut für Industrielle Genetik, Universität Stuttgart, Stuttgart, Germany.
Josef AltenbuchnerInstitut für Industrielle Genetik, Universität Stuttgart, Stuttgart, Germany josef.altenbuchner@iig.uni-stuttgart.de.
University of Stuttgart · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We developed a counterselectable deletion system for Thermus thermophilus HB27 based on cytosine deaminase (encoded by codA) from Thermaerobacter marianensis DSM 12885 and the sensitivity of T. thermophilus HB27 to the antimetabolite 5-fluorocytosine (5-FC). The deletion vector comprises the pUC18 origin of replication, a thermostable kanamycin resistance marker functional in T. thermophilus HB27, and codA under the control of a constitutive putative trehalose promoter from T. thermophilus HB27. The functionality of the system was demonstrated by deletion of the bglT gene, encoding a β-glycosidase, and three carotenoid biosynthesis genes, CYP175A1, crtY, and crtI, from the genome of T. thermophilus HB27.

Indexed as

Selection, Geneticbeta-GlucosidaseCytosine DeaminaseEubacterialesFlucytosineGene DeletionGene Knockout TechniquesGenetics, MicrobialThermus thermophilusbeta-GlucosidaseCytosine DeaminaseFlucytosine

Identifiers

PMID26655764
PMCPMC4751836
OpenAlexW2259056198

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.