Evidence map›Paper›PMID 26655754›Full record

ArticleApplied and environmental microbiology2016

A New N-Acyl Homoserine Lactone Synthase in an Uncultured Symbiont of the Red Sea Sponge Theonella swinhoei.

Maya Britstein, Giulia Devescovi, Kim M Handley, Assaf Malik, Markus Haber, Kumar Saurav, Roberta Teta, Valeria Costantino, Ilia Burgsdorf, Jack A Gilbert and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Maya BritsteinDepartment of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel.
Giulia DevescoviBacteriology Group, International Centre for Genetic Engineering & Biotechnology, Padriciano, Trieste, Italy.
Kim M HandleyArgonne National Laboratory, Institute for Genomic and Systems Biology, Argonne, Illinois, USA.
Assaf MalikBioinformatics Service Unit, University of Haifa, Haifa, Israel.
Markus HaberDepartment of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel.
Kumar SauravDepartment of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel.
Roberta TetaDipartimento di Farmacia, Università degli Studi di Napoli Federico II, Naples, Italy.
Valeria CostantinoDipartimento di Farmacia, Università degli Studi di Napoli Federico II, Naples, Italy.
Ilia BurgsdorfDepartment of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel.
Jack A GilbertArgonne National Laboratory, Institute for Genomic and Systems Biology, Argonne, Illinois, USA.
Noa SherBioinformatics Service Unit, University of Haifa, Haifa, Israel.
Vittorio VenturiBacteriology Group, International Centre for Genetic Engineering & Biotechnology, Padriciano, Trieste, Italy.
Laura SteindlerDepartment of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel lsteindler@univ.haifa.ac.il.
University of Haifa · ILInternational Centre for Genetic Engineering and Biotechnology · ITUniversity of Naples Federico II · ITArgonne National Laboratory · USMarine Biological Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sponges harbor a remarkable diversity of microbial symbionts in which signal molecules can accumulate and enable cell-cell communication, such as quorum sensing (QS). Bacteria capable of QS were isolated from marine sponges; however, an extremely small fraction of the sponge microbiome is amenable to cultivation. We took advantage of community genome assembly and binning to investigate the uncultured majority of sponge symbionts. We identified a complete N-acyl-homoserine lactone (AHL)-QS system (designated TswIR) and seven partial luxI homologues in the microbiome of Theonella swinhoei. The TswIR system was novel and shown to be associated with an alphaproteobacterium of the order Rhodobacterales, here termed Rhodobacterales bacterium TS309. The tswI gene, when expressed in Escherichia coli, produced three AHLs, two of which were also identified in a T. swinhoei sponge extract. The taxonomic affiliation of the 16S rRNA of Rhodobacterales bacterium TS309 to a sponge-coral specific clade, its enrichment in sponge versus seawater and marine sediment samples, and the presence of sponge-specific features, such as ankyrin-like domains and tetratricopeptide repeats, indicate a likely symbiotic nature of this bacterium.

Indexed as

MicrobiotaSymbiosisAcyl-ButyrolactonesAlphaproteobacteriaAmino Acid SequenceAnimalsCloning, MolecularCluster AnalysisDNA, BacterialDNA, RibosomalEscherichia coliGene ExpressionIndian OceanLigasesMolecular Sequence DataPhylogenyAcyl-ButyrolactonesDNA, BacterialDNA, RibosomalLigasesN-acylhomoserine lactone synthaseRNA, Ribosomal, 16S

Identifiers

PMID26655754
PMCPMC4751858
OpenAlexW2195574998

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.