Evidence map›Paper›PMID 26655753›Full record

ArticleApplied and environmental microbiology2016

Enhancement of Swimming Speed Leads to a More-Efficient Chemotactic Response to Repellent.

Richa Karmakar, R V S Uday Bhaskar, Rajesh E Jesudasan, Mahesh S Tirumkudulu, K V Venkatesh

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Richa KarmakarDepartment of Chemical Engineering, Indian Institute of Technology Bombay, Mumbai, India mahesh@che.iitb.ac.in venks@iitb.ac.in.
R V S Uday BhaskarDepartment of Chemical Engineering, Indian Institute of Technology Bombay, Mumbai, India.
Rajesh E JesudasanDepartment of Chemical Engineering, Indian Institute of Technology Bombay, Mumbai, India.
Mahesh S TirumkuduluDepartment of Chemical Engineering, Indian Institute of Technology Bombay, Mumbai, India mahesh@che.iitb.ac.in venks@iitb.ac.in.
K V VenkateshDepartment of Chemical Engineering, Indian Institute of Technology Bombay, Mumbai, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Negative chemotaxis refers to the motion of microorganisms away from regions with high concentrations of chemorepellents. In this study, we set controlled gradients of NiCl2, a chemorepellent, in microchannels to quantify the motion of Escherichia coli over a broad range of concentrations. The experimental technique measured the motion of the bacteria in space and time and further related the motion to the local concentration profile of the repellent. Results show that the swimming speed of bacteria increases with an increasing concentration of repellent, which in turn enhances the drift velocity. The contribution of the increased swimming speed to the total drift velocity was in the range of 20 to 40%, with the remaining contribution coming from the modulation of the tumble frequency. A simple model that incorporates receptor dynamics, including adaptation, intracellular signaling, and swimming speed variation, was able to qualitatively capture the observed trend in drift velocity.

Indexed as

ChemotaxisLocomotionEscherichia coliModels, BiologicalNickelNickelnickel chloride

Identifiers

PMID26655753
PMCPMC4751852

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.