ArticleApplied and environmental microbiology2016
Comprehensive Genomic Analyses of the OM43 Clade, Including a Novel Species from the Red Sea, Indicate Ecotype Differentiation among Marine Methylotrophs.
Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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22 citing papers in PubMed.
- Illuminating the newly produced viruses within the virosphere with bioorthogonal noncanonical amino acid tagging and single-virus genomic sequencing technologies.ISME communications · 2026Article
- Monthly Variation, Environmental Drivers, and Ecological Functions of Marine Bacterial Community in a Eutrophic Coastal Area of China.Microorganisms · 2025Article
- Together throughout the year: seasonal patterns of bacterial and eukaryotic microbial communities in a macrotidal estuary.Environmental microbiome · 2025Article
- Emerging role of rare earth elements in biomolecular functions.The ISME journal · 2025Review
- Temporal variations of bacterial and eukaryotic community in coastal waters-implications for aquaculture.Applied microbiology and biotechnology · 2024Article
- Flexible genomic island conservation across freshwater and marine Methylophilaceae.The ISME journal · 2024Article
- Genomic diversity and biogeographic distributions of a novel lineage of bacteriophages that infect marine OM43 bacteria.Microbiology spectrum · 2023Article
- Spatial Variation ofPlants (Basel, Switzerland) · 2021Article
- Cultivable Winogradskyella species are genomically distinct from the sympatric abundant candidate species.ISME communications · 2021Article
- Adaptability of a Caproate-Producing Bacterium Contributes to Its Dominance in an Anaerobic Fermentation System.Applied and environmental microbiology · 2021Article
- Article
- Genomic Characterization and Distribution Pattern of a Novel Marine OM43 Phage.Frontiers in microbiology · 2021Article
- Genomes of the "mSystems · 2020Article
- Niche Differentiation of Host-Associated Pelagic Microbes and Their Potential Contribution to Biogeochemical Cycling in Artificially Warmed Lakes.Frontiers in microbiology · 2020Article
- Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae.The ISME journal · 2019Article
- Marine-freshwater prokaryotic transitions require extensive changes in the predicted proteome.Microbiome · 2019Article
- Lanthanide-Dependent Methanol Dehydrogenases of XoxF4 and XoxF5 Clades Are Differentially Distributed Among Methylotrophic Bacteria and They Reveal Different Biochemical Properties.Frontiers in microbiology · 2018Article
- Building a bio-based industry in the Middle East through harnessing the potential of the Red Sea biodiversity.Applied microbiology and biotechnology · 2017Review
- Article
- mdRNA-Seq analysis of marine microbial communities from the northern Red Sea.Scientific reports · 2016Article
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8 authors.
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Abstract
The OM43 clade within the family Methylophilaceae of Betaproteobacteria represents a group of methylotrophs that play important roles in the metabolism of C1 compounds in marine environments and other aquatic environments around the globe. Using dilution-to-extinction cultivation techniques, we successfully isolated a novel species of this clade (here designated MBRS-H7) from the ultraoligotrophic open ocean waters of the central Red Sea. Phylogenomic analyses indicate that MBRS-H7 is a novel species that forms a distinct cluster together with isolate KB13 from Hawaii (Hawaii-Red Sea [H-RS] cluster) that is separate from the cluster represented by strain HTCC2181 (from the Oregon coast). Phylogenetic analyses using the robust 16S-23S internal transcribed spacer revealed a potential ecotype separation of the marine OM43 clade members, which was further confirmed by metagenomic fragment recruitment analyses that showed trends of higher abundance in low-chlorophyll and/or high-temperature provinces for the H-RS cluster but a preference for colder, highly productive waters for the HTCC2181 cluster. This potential environmentally driven niche differentiation is also reflected in the metabolic gene inventories, which in the case of the H-RS cluster include those conferring resistance to high levels of UV irradiation, temperature, and salinity. Interestingly, we also found different energy conservation modules between these OM43 subclades, namely, the existence of the NADH:quinone oxidoreductase complex I (NUO) system in the H-RS cluster and the nonhomologous NADH:quinone oxidoreductase (NQR) system in the HTCC2181 cluster, which might have implications for their overall energetic yields.
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