Evidence map›Paper›PMID 26655738›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor MONGOOSE1.

Nadav Sorek, Heidi Szemenyei, Hagit Sorek, Abigail Landers, Heather Knight, Stefan Bauer, David E Wemmer, Chris R Somerville

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Recent genome resequencing paraded COBRA-Frontiers in plant science · 2023
    Article
  8. Article
  9. Article
  10. Review
  11. Double Mutant Analysis with the Large Flower Mutant,Plants (Basel, Switzerland) · 2021
    Article
  12. Article
  13. Article
  14. Glycosylphosphatidylinositol-Anchored Proteins inFrontiers in plant science · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. The Multitalented MEDIATOR25.Frontiers in plant science · 2017
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Nadav SorekEnergy Biosciences Institute, University of California, Berkeley, CA 94720; Plant and Microbial Biology Department, University of California, Berkeley, CA 94720;
Heidi SzemenyeiEnergy Biosciences Institute, University of California, Berkeley, CA 94720;
Hagit SorekEnergy Biosciences Institute, University of California, Berkeley, CA 94720;
Abigail LandersEnergy Biosciences Institute, University of California, Berkeley, CA 94720;
Heather KnightSchool of Biological and Biomedical Sciences, Durham University, Durham DH1 3LE, United Kingdom;
Stefan BauerEnergy Biosciences Institute, University of California, Berkeley, CA 94720;
David E WemmerDepartment of Chemistry, University of California, Berkeley, CA 94720.
Chris R SomervilleEnergy Biosciences Institute, University of California, Berkeley, CA 94720; Plant and Microbial Biology Department, University of California, Berkeley, CA 94720; crs@berkeley.edu.
University of California, Berkeley · USEnergy Biosciences Institute · USDurham University · GB

Funding

Genome Sequencer FLXS10RR029668 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI NGAI, JOHN J. · 2010 to 2010
$623k
Illumina Sequencer to Facilitate Functional Genomics at BerkeleyS10RR027303 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAYLOR, JOHN W. · 2010 to 2010
$500k
Biotechnology and Biological Sciences Research Council BB/F01984X/1NCRR NIH HHS S10 RR027303NCRR NIH HHS S10RR027303NCRR NIH HHS S10 RR029668NCRR NIH HHS S10RR029668
6 · The paper itself

Abstract

We performed a screen for genetic suppressors of cobra, an Arabidopsis mutant with defects in cellulose formation and an increased ratio of unesterified/esterified pectin. We identified a suppressor named mongoose1 (mon1) that suppressed the growth defects of cobra, partially restored cellulose levels, and restored the esterification ratio of pectin to wild-type levels. mon1 was mapped to the MEDIATOR16 (MED16) locus, a tail mediator subunit, also known as SENSITIVE TO FREEZING6 (SFR6). When separated from the cobra mutation, mutations in MED16 caused resistance to cellulose biosynthesis inhibitors, consistent with their ability to suppress the cobra cellulose deficiency. Transcriptome analysis revealed that a number of cell wall genes are misregulated in med16 mutants. Two of these genes encode pectin methylesterase inhibitors, which, when ectopically expressed, partially suppressed the cobra phenotype. This suggests that cellulose biosynthesis can be affected by the esterification levels of pectin, possibly through modifying cell wall integrity or the interaction of pectin and cellulose.

Indexed as

MutationArabidopsisArabidopsis ProteinsCelluloseCell WallEsterificationGene Expression ProfilingGene Expression Regulation, PlantMembrane GlycoproteinsMonosaccharidesPectinsPhenotypeReverse Transcriptase Polymerase Chain ReactionTrans-ActivatorsArabidopsis ProteinsCelluloseCOB protein, ArabidopsisMembrane GlycoproteinsMonosaccharidesPectinsSFR6 protein, ArabidopsisTrans-Activatorscellulosecell wallfreezing tolerancepectintranscription

Identifiers

PMID26655738
PMCPMC4703005
OpenAlexW2193670725

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.