ArticleGenome biology2015
Understanding Brassicaceae evolution through ancestral genome reconstruction.
Article in Genome biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 41 papers.
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41 citing papers in PubMed, 110 citations in OpenAlex.
- Complex Interplay of Tandem, Segmental, Whole Genome Duplication, and Re-organization Drives Expansion of SAUR Gene Family in Brassicaceae.Biochemical genetics · 2026Article
- Genome-wide identification ofFrontiers in plant science · 2025Article
- Altering cold-regulated gene expression decouples the salicylic acid-growth trade-off in Arabidopsis.The Plant cell · 2024Article
- First draft reference genome and annotation of the alternative oil species Physaria fendleri.G3 (Bethesda, Md.) · 2024Article
- Genomes of Meniocus linifolius and Tetracme quadricornis reveal the ancestral karyotype and genomic features of core Brassicaceae.Plant communications · 2024Article
- Genome-wide identification and evolution of the tubulin gene family in Camelina sativa.BMC genomics · 2024Article
- A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range.Nature genetics · 2024Article
- SyntenyViewer: a comparative genomics-driven translational research tool.Database : the journal of biological databases and curation · 2023Article
- Genome-wide identification and expression analysis of the anthocyanin-related genes during seed coat development in six Brassica species.BMC genomics · 2023Article
- Synteny Identifies Reliable Orthologs for Phylogenomics and Comparative Genomics of the Brassicaceae.Genome biology and evolution · 2023Article
- Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom.Nature ecology & evolution · 2023Article
- Insights from the genomes of 4 diploid Camelina spp.G3 (Bethesda, Md.) · 2022Article
- CRISPR/Cas9-Mediated Targeted Mutagenesis ofInternational journal of molecular sciences · 2022Article
- Production and cytology of Brassica autoallohexaploids with two and four copies of two subgenomes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Article
- Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates.Plant biotechnology journal · 2022Article
- Characterization of an Arabidopsis Defensin-like Gene Conferring Resistance against Nematodes.Plants (Basel, Switzerland) · 2022Article
- Intraspecific variation in plant-associated herbivore communities is phylogenetically structured in Brassicaceae.Ecology letters · 2021Article
- QTL Mapping and Diurnal Transcriptome Analysis Identify Candidate Genes RegulatingInternational journal of molecular sciences · 2021Article
- Genome structural evolution in Brassica crops.Nature plants · 2021Article
Corrections and comments
- Erratum issued
Authors and funding
8 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundBrassicaceae is a family of green plants of high scientific and economic interest, including thale cress (Arabidopsis thaliana), cruciferous vegetables (cabbages) and rapeseed.
resultsWe reconstruct an evolutionary framework of Brassicaceae composed of high-resolution ancestral karyotypes using the genomes of modern A. thaliana, Arabidopsis lyrata, Capsella rubella, Brassica rapa and Thellungiella parvula. The ancestral Brassicaceae karyotype (Brassicaceae lineages I and II) is composed of eight protochromosomes and 20,037 ordered and oriented protogenes. After speciation, it evolved into the ancestral Camelineae karyotype (eight protochromosomes and 22,085 ordered protogenes) and the proto-Calepineae karyotype (seven protochromosomes and 21,035 ordered protogenes) genomes.
conclusionsThe three inferred ancestral karyotype genomes are shown here to be powerful tools to unravel the reticulated evolutionary history of extant Brassicaceae genomes regarding the fate of ancestral genes and genomic compartments, particularly centromeres and evolutionary breakpoints. This new resource should accelerate research in comparative genomics and translational research by facilitating the transfer of genomic information from model systems to species of agronomic interest.
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