Evidence map›Paper›PMID 26652980›Full record

ArticleComputer methods and programs in biomedicine2016

Resolving complex research data management issues in biomedical laboratories: Qualitative study of an industry-academia collaboration.

Sahiti Myneni, Vimla L Patel, G Steven Bova, Jian Wang, Christopher F Ackerman, Cynthia A Berlinicke, Steve H Chen, Mikael Lindvall, Donald J Zack

Abstract read
In one paragraph

Article in Computer methods and programs in biomedicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 10 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 1 country.

Sahiti MyneniSchool of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, United States. Electronic address: Sahiti.Myneni@uth.tmc.edu.
Vimla L PatelNew York Academy of Medicine, New York, NY, United States; Department of Biomedical Informatics, Arizona State University, United States.
G Steven BovaDepartments of Pathology, Genetic Medicine, Health Sciences Informatics, Oncology, and Urology, Johns Hopkins University School of Medicine, Baltimore, MD, United States.
Jian WangBioFortis Inc., Columbia, MD, United States.
Christopher F AckermanFraunhofer Institute for Experimental Software Engineering, College Park, MD, United States.
Cynthia A BerlinickeWilmer Eye Institute, United States.
Steve H ChenBioFortis Inc., Columbia, MD, United States.
Mikael LindvallFraunhofer Institute for Experimental Software Engineering, College Park, MD, United States.
Donald J ZackDepartments of Pathology, Genetic Medicine, Health Sciences Informatics, Oncology, and Urology, Johns Hopkins University School of Medicine, Baltimore, MD, United States; Wilmer Eye Institute, United States; Institute of Genetic Medicine Johns Hopkins University School of Medicine, Baltimore, MD, United States.
BioFortis (United States) · USFraunhofer USA Center Mid-Atlantic CMA · USArizona State University · USJohns Hopkins Medicine · USJohns Hopkins University · USSmith-Kettlewell Eye Research Institute · USThe University of Texas Health Science Center at Houston · US

Funding

Bioscience Research Integration Software PlatformR42CA105217 · NCI · BIOFORTIS, INC. · PI BOVA, GEORGE STEVEN · 2004 to 2009
$2.7M
A High Content Screening Approach for the Retinal Degenerative DiseasesR01EY024249 · NEI · JOHNS HOPKINS UNIVERSITY · PI BERLINICKE, CYNTHIA · 2015 to 2019
$2.0M
NCI NIH HHS 1R41CA105217-01A1-STTRNCI NIH HHS R42 CA105217NEI NIH HHS R01 EY024249
6 · The paper itself

Abstract

This paper describes a distributed collaborative effort between industry and academia to systematize data management in an academic biomedical laboratory. Heterogeneous and voluminous nature of research data created in biomedical laboratories make information management difficult and research unproductive. One such collaborative effort was evaluated over a period of four years using data collection methods including ethnographic observations, semi-structured interviews, web-based surveys, progress reports, conference call summaries, and face-to-face group discussions. Data were analyzed using qualitative methods of data analysis to (1) characterize specific problems faced by biomedical researchers with traditional information management practices, (2) identify intervention areas to introduce a new research information management system called Labmatrix, and finally to (3) evaluate and delineate important general collaboration (intervention) characteristics that can optimize outcomes of an implementation process in biomedical laboratories. Results emphasize the importance of end user perseverance, human-centric interoperability evaluation, and demonstration of return on investment of effort and time of laboratory members and industry personnel for success of implementation process. In addition, there is an intrinsic learning component associated with the implementation process of an information management system. Technology transfer experience in a complex environment such as the biomedical laboratory can be eased with use of information systems that support human and cognitive interoperability. Such informatics features can also contribute to successful collaboration and hopefully to scientific productivity.

Indexed as

Information SystemsAnthropology, CulturalBiomedical ResearchCognitionCommunity-Institutional RelationsCooperative BehaviorHumansInformation ManagementLaboratoriesReproducibility of ResultsSoftwareTechnologyUniversitiesBiomedical laboratoryCognitionIndustry–academia collaborationInformatics implementationInformation managementVirtual research environment

Identifiers

PMID26652980
PMCPMC4778387
OpenAlexW2209765290

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.