Evidence map›Paper›PMID 26652654›Full record

ArticleBiochemistry2016

The Anchored Flexibility Model in LC8 Motif Recognition: Insights from the Chica Complex.

Sarah Clark, Afua Nyarko, Frank Löhr, P Andrew Karplus, Elisar Barbar

Abstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

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  15. Interactions by Disorder - A Matter of Context.Frontiers in molecular biosciences · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Sarah ClarkDepartment of Biochemistry and Biophysics, Oregon State University , Corvallis, Oregon 97331, United States.
Afua NyarkoDepartment of Biochemistry and Biophysics, Oregon State University , Corvallis, Oregon 97331, United States.
Frank LöhrInstitute of Biophysical Chemistry, Goethe-University , D-60438 Frankfurt, Germany.
P Andrew KarplusDepartment of Biochemistry and Biophysics, Oregon State University , Corvallis, Oregon 97331, United States.
Elisar BarbarDepartment of Biochemistry and Biophysics, Oregon State University , Corvallis, Oregon 97331, United States.
Oregon State University · USGoethe University Frankfurt · DE

Funding

Dynein light chain as a dimerization hub for natively disordered proteinsR01GM084276 · NIGMS · OREGON STATE UNIVERSITY · PI BARBAR, ELISAR J · 2009 to 2013
$1.5M
NIGMS NIH HHS GM 084276NIGMS NIH HHS R01 GM084276
6 · The paper itself

Abstract

LC8 is a dimeric hub protein involved in a large number of interactions central to cell function. It binds short linear motifs--usually containing a Thr-Gln-Thr (TQT) triplet--in intrinsically disordered regions of its binding partners, some of which have several LC8 recognition motifs in tandem. Hallmarks of the 7-10 amino acid motif are a high variability of LC8 binding affinity and extensive sequence permutation outside the TQT triplet. To elucidate the molecular basis of motif recognition, we use a 69-residue segment of the human Chica spindle adaptor protein that contains four putative TQT recognition motifs in tandem. NMR-derived secondary chemical shifts and relaxation properties show that the Chica LC8 binding domain is essentially disordered with a dynamically restricted segment in one linker between motifs. Calorimetry of LC8 binding to synthetic motif-mimicking peptides shows that the first motif dominates LC8 recruitment. Crystal structures of the complexes of LC8 bound to each of two motif peptides show highly ordered and invariant TQT-LC8 interactions and more flexible and conformationally variable non-TQT-LC8 interactions. These data highlight rigidity in both LC8 residues that bind TQT and in the TQT portion of the motif as an important new characteristic of LC8 recognition. On the basis of these data and others in the literature, we propose that LC8 recognition is based on rigidly fixed interactions between LC8 and TQT residues that act as an anchor, coupled with inherently flexible interactions between LC8 and non-TQT residues. The "anchored flexibility" model explains the requirement for the TQT triplet and the ability of LC8 to accommodate a large variety of motif sequences and affinities.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnimalsCell Cycle ProteinsCrystallography, X-RayCytoplasmic DyneinsHumansMicrotubule-Associated ProteinsModels, MolecularMolecular Sequence DataProtein BindingProtein Interaction MapsProtein Structure, TertiarySequence AlignmentCell Cycle ProteinsCytoplasmic DyneinsDYNLL1 protein, humanFAM83D protein, humanMicrotubule-Associated Proteins

Identifiers

PMID26652654
PMCPMC6995037
OpenAlexW2205202997

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.