Evidence map›Paper›PMID 26651078›Full record

ArticleJournal of visualized experiments : JoVE2015

Laser-capture Microdissection of Human Prostatic Epithelium for RNA Analysis.

Giovanni Lugli, Yachana Kataria, Zachary Richards, Peter Gann, Xiaofeng Zhou, Larisa Nonn

Open access · bronzeAbstract read
In one paragraph

Article in Journal of visualized experiments : JoVE, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. microRNAs and DICER1 are regulated by 1,25-dihydroxyvitamin D in prostate stroma.The Journal of steroid biochemistry and molecular biology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Giovanni LugliDepartment of Pathology, University of Illinois at Chicago.
Yachana KatariaDepartment of Pathology, University of Illinois at Chicago.
Zachary RichardsDepartment of Pathology, University of Illinois at Chicago.
Peter GannDepartment of Pathology, University of Illinois at Chicago.
Xiaofeng ZhouDepartment of Periodontics, University of Illinois at Chicago.
Larisa NonnDepartment of Pathology, University of Illinois at Chicago; lnonn@uic.edu.
University of Illinois Chicago · US

Funding

MiR-183-96-182 cluster, prostatic zinc homeostasis and carcinogenesisR01CA166588 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI NONN, LARISA · 2012 to 2016
$1.9M
Vitamin D3 alters stromal-epithelial inflammatory crosstalk in human prostateR03CA172827 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI NONN, LARISA · 2013 to 2014
$157k
NCI NIH HHS R01 CA166588NCI NIH HHS R03 CA172827
6 · The paper itself

Abstract

The prostate gland contains a heterogeneous milieu of stromal, epithelial, neuroendocrine and immune cell types. Healthy prostate is comprised of fibromuscular stroma surrounding discrete epithelial-lined secretory lumens and a very small population of immune and neuroendocrine cells. In contrast, areas of prostate cancer have increased dysplastic luminal epithelium with greatly reduced or absent stromal population. Given the profound difference between stromal and epithelial cell types, it is imperative to separate the cell types for any type of downstream molecular analysis. Despite this knowledge, the bulk of gene expression studies compare benign prostate to cancer without micro-dissection, leading to stromal bias in the benign samples. Laser-capture micro-dissection (LCM) is an effective method to physically separate different cell types from a specimen section. The goal of this protocol is to show that RNA can be successfully isolated from LCM-collected human prostatic epithelium and used for downstream gene expression studies such as RT-qPCR and RNAseq.

Identifiers

PMID26651078
PMCPMC4692752
OpenAlexW2176315884

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.