Evidence map›Paper›PMID 26649273›Full record

ArticleFEBS open bio2015

Kinetic studies on the oxidation of semiquinone and hydroquinone forms of Arabidopsis cryptochrome by molecular oxygen.

Luuk J G W van Wilderen, Gary Silkstone, Maria Mason, Jasper J van Thor, Michael T Wilson

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. A structural decryption of cryptochromes.Frontiers in chemistry · 2024
    Review
  5. Review
  6. Article
  7. Chemical and structural analysis of a photoactive vertebrate cryptochrome from pigeon.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Luuk J G W van WilderenDivision of Molecular Biosciences, Faculty of Natural Sciences, South Kensington Campus, Imperial College London, London, United Kingdom.
Gary SilkstoneDepartment of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, United Kingdom.
Maria MasonDepartment of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, United Kingdom.
Jasper J van ThorDivision of Molecular Biosciences, Faculty of Natural Sciences, South Kensington Campus, Imperial College London, London, United Kingdom.
Michael T WilsonDepartment of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, United Kingdom.
University of Essex · GBImperial College London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryptochromes (crys) are flavoprotein photoreceptors present throughout the biological kingdom that play important roles in plant development and entrainment of the circadian clock in several organisms. Crys non-covalently bind flavin adenine dinucleotide (FAD) which undergoes photoreduction from the oxidised state to a radical form suggested to be active in signalling in vivo. Although the photoreduction reactions have been well characterised by a number of approaches, little is known of the oxidation reactions of crys and their mechanisms. In this work, a stopped-flow kinetics approach is used to investigate the mechanism of cry oxidation in the presence and absence of an external electron donor. This in vitro study extends earlier investigations of the oxidation of Arabidopsis cryptochrome1 by molecular oxygen and demonstrates that, under some conditions, a more complex model for oxidation of the flavin than was previously proposed is required to accommodate the spectral evidence (see P. Müller and M. Ahmad (2011) J. Biol. Chem. 286, 21033-21040 [1]). In the absence of an electron donor, photoreduction leads predominantly to the formation of the radical FADH(•). Dark recovery most likely forms flavin hydroperoxide (FADHOOH) requiring superoxide. In the presence of reductant (DTT), illumination yields the fully reduced flavin species (FADH(-)). Reaction of this with dioxygen leads to transient radical (FADH(•)) and simultaneous accumulation of oxidised species (FAD), possibly governed by interplay between different cryptochrome molecules or cooperativity effects within the cry homodimer.

Indexed as

crys, cryptochromesDTT, dithiothreitolFAD, flavin adenine dinucleotideFADHOOH, flavin hydroperoxideFlavin adenine dinucleotideFlavin hydroperoxideGlobal analysisMTHF, methenyltetrahydrofolateNOS, nitric oxide synthasePhotoreductionSpectroscopyStopped-flow

Identifiers

PMID26649273
PMCPMC4643184
OpenAlexW2211879474

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.