Evidence map›Paper›PMID 26649149›Full record

ArticleStandards in genomic sciences2015

Genome sequence of the clover symbiont Rhizobium leguminosarum bv. trifolii strain CC275e.

Clément Delestre, Aurélie Laugraud, Hayley Ridgway, Clive Ronson, Maureen O'Callaghan, Brent Barrett, Ross Ballard, Andrew Griffiths, Sandra Young, Celine Blond and 2 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Clément DelestreUniversity of Bordeaux, IT Science, 351 Cours de la Libération, 33400 Talence, France.
Aurélie LaugraudAgResearch Ltd, Lincoln Campus, Private Bag 4749, Christchurch, 8140 New Zealand.
Hayley RidgwayFaculty of Agriculture and Life Sciences, Lincoln University, PO Box 84, Christchurch, New Zealand.
Clive RonsonDepartment of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin, New Zealand.
Maureen O'CallaghanAgResearch Ltd, Lincoln Campus, Private Bag 4749, Christchurch, 8140 New Zealand.
Brent BarrettAgResearch Ltd, Grasslands Research Centre, Private Bag 11008, Palmerston North, New Zealand.
Ross BallardSouth Australian Research and Development Institute, Urrbrae, South Australia Australia.
Andrew GriffithsAgResearch Ltd, Grasslands Research Centre, Private Bag 11008, Palmerston North, New Zealand.
Sandra YoungAgResearch Ltd, Lincoln Campus, Private Bag 4749, Christchurch, 8140 New Zealand.
Celine BlondFaculty of Agriculture and Life Sciences, Lincoln University, PO Box 84, Christchurch, New Zealand.
Emily GerardAgResearch Ltd, Lincoln Campus, Private Bag 4749, Christchurch, 8140 New Zealand.
Steve WakelinAgResearch Ltd, Lincoln Campus, Private Bag 4749, Christchurch, 8140 New Zealand.
AgResearch · NZLincoln University · NZSouth Australian Research and Development Institute · AUUniversity of Otago · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhizobium leguminosarum bv. trifolii strain CC275e is a highly effective, N2-fixing microsymbiont of white clover (Trifolium repens L.). The bacterium has been widely used in both Australia and New Zealand as a clover seed inoculant and, as such, has delivered the equivalent of millions of dollars of nitrogen into these pastoral systems. R. leguminosarum strain CC275e is a rod-shaped, motile, Gram-negative, non-spore forming bacterium. The genome was sequenced on an Illumina MiSeq instrument using a 2 × 150 bp paired end library and assembled into 29 scaffolds. The genome size is 7,077,367 nucleotides, with a GC content of 60.9 %. The final, high-quality draft genome contains 6693 protein coding genes, close to 85 % of which were assigned to COG categories. This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession JRXL00000000. The sequencing of this genome will enable identification of genetic traits associated with host compatibility and high N2 fixation characteristics in Rhizobium leguminosarum. The sequence will also be useful for development of strain-specific markers to assess factors associated with environmental fitness, competiveness for host nodule occupancy, and survival on legume seeds (New Zealand Ministry of Business, Innovation and Employment program, 'Improving forage legume-rhizobia performance' contract C10X1308 and DairyNZ Ltd.).

Indexed as

AlphaproteobacteriaMicrosymbiontNitrogen fixationRhizobiaRoot-nodule bacteria

Identifiers

PMID26649149
PMCPMC4672485
OpenAlexW2195244140

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.