Evidence map›Paper›PMID 26648252›Full record

ArticleScientific reports2015

Transcriptome analysis of the key role of GAT2 gene in the hyper-accumulation of copper in the oyster Crassostrea angulata.

Bo Shi, Zekun Huang, Xu Xiang, Miaoqin Huang, Wen-Xiong Wang, Caihuan Ke

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Article
  7. Transcriptomic Analysis on Responses of Murine Lungs toFrontiers in cellular and infection microbiology · 2017
    Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Bo ShiState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, PR China.
Zekun HuangState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, PR China.
Xu XiangSchool of Life Sciences, Xiamen University, Xiamen 361102, PR China.
Miaoqin HuangState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, PR China.
Wen-Xiong WangDivision of Life Science, The Hong Kong University of Science and Technology, Hong Kong, PR China.
Caihuan KeState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361102, PR China.
Xiamen University · CNHong Kong University of Science and Technology · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

One paradigm of oysters as the hyper-accumulators of many toxic metals is the inter-individual variation of metals, but the molecular mechanisms remain very elusive. A comprehensive analysis of the transcriptome of Crassostrea angulata was conducted to reveal the relationship between gene expression and differential Cu body burden in oysters. Gene ontology analysis for the differentially expressed genes showed that the neurotransmitter transporter might affect the oyster behavior, which in turn led to difference in Cu accumulation. The ATP-binding cassette transporters superfamily played an important role in the maintenance of cell Cu homeostasis, vitellogenin and apolipophorin transport, and elimination of excess Cu. Gill and mantle Cu concentrations were significantly reduced after silencing the GABA transporter 2 (GAT2) gene, but increased after the injection of GABA receptor antagonists, suggesting that the function of GABA transporter 2 gene was strongly related to Cu accumulation. These findings demonstrated that GABA transporter can control the action of transmitter GABA in the nervous system, thereby affecting the Cu accumulation in the gills and mantles.

Indexed as

Gene Expression ProfilingTranscriptomeAnimalsCopperCrassostreaGABA Plasma Membrane Transport Proteinsgamma-Aminobutyric AcidGene Expression RegulationHigh-Throughput Nucleotide SequencingOrgan SpecificityReceptors, GABAReproducibility of ResultsCopperGABA Plasma Membrane Transport Proteinsgamma-Aminobutyric AcidReceptors, GABA

Identifiers

PMID26648252
PMCPMC4673431
OpenAlexW2290177109

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.