Evidence map›Paper›PMID 26648033›Full record

ArticleJournal of biosciences2015

Regulatory single nucleotide polymorphisms at the beginning of intron 2 of the human KRAS gene.

Elena V Antontseva, Marina Yu Matveeva, Natalia P Bondar, Elena V Kashina, Elena Yu Leberfarb, Leonid O Bryzgalov, Polina A Gervas, Anastasia A Ponomareva, Nadezhda V Cherdyntseva, Yury L Orlov and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of biosciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Proteasome regulators in pancreatic cancer.World journal of gastrointestinal oncology · 2022
    Review
  3. Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Elena V AntontsevaInstitute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Lavrentieva avenue 10, Novosibirsk 630090, Russian Federation.
Marina Yu Matveeva
Natalia P Bondar
Elena V Kashina
Elena Yu Leberfarb
Leonid O Bryzgalov
Polina A Gervas
Anastasia A Ponomareva
Nadezhda V Cherdyntseva
Yury L Orlov
Tatiana I Merkulova
Institute of Cytology and Genetics · RUTomsk Cancer Research Institute · RUNovosibirsk State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There are two regulatory single nucleotide polymorphisms (rSNPs) at the beginning of the second intron of the mouse K-ras gene that are strongly associated with lung cancer susceptibility. We performed functional analysis of three SNPs (rs12228277: T greater than A, rs12226937: G greater than A, and rs61761074: T greater than G) located in the same region of human KRAS. We found that rs12228277 and rs61761074 result in differential binding patterns of lung nuclear proteins to oligonucleotide probes corresponding two alternative alleles; in both cases, the transcription factor NF-Y is involved. G greater than A substitution (rs12226937) had no effect on the binding of lung nuclear proteins. However, all the nucleotide substitutions under study showed functional effects in a luciferase reporter assay. Among them, rs61761074 demonstrated a significant correlation with allele frequency in non-small-cell lung cancer (NSCLC). Taken together, the results of our study suggest that a T greater than G substitution at nucleotide position 615 in the second intron of the KRAS gene (rs61761074) may represent a promising genetic marker of NSCLC.

Indexed as

Genes, rasPolymorphism, Single NucleotideAdenocarcinomaAdenocarcinoma of LungCarcinoma, Non-Small-Cell LungCase-Control StudiesCCAAT-Binding FactorGATA6 Transcription FactorGene FrequencyGenetic MarkersHumansIntronsLung NeoplasmsNeoplasms, Squamous Cellras ProteinsSiberiaCCAAT-Binding FactorGATA6 Transcription FactorGenetic Markersras Proteins

Identifiers

PMID26648033
OpenAlexW2196474354

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.