Evidence map›Paper›PMID 26647789›Full record

ArticleInternational journal of oncology2016

Differential regulation and synthetic lethality of exclusive RB1 and CDKN2A mutations in lung cancer.

Nayoung Kim, Mee Song, Somin Kim, Yujeong Seo, Yonghwan Kim, Sukjoon Yoon

Open access · bronzeAbstract read
In one paragraph

Article in International journal of oncology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 29 citations in OpenAlex.

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  6. Invasive squamous cell carcinomas and precursor lesions on UV-exposed epithelia demonstrate concordant genomic complexity in driver genes.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Nayoung KimCenter for Advanced Bioinformatics and Systems Medicine, Sookmyung Women's University, Seoul, Republic of Korea.
Mee SongCenter for Advanced Bioinformatics and Systems Medicine, Sookmyung Women's University, Seoul, Republic of Korea.
Somin KimCenter for Advanced Bioinformatics and Systems Medicine, Sookmyung Women's University, Seoul, Republic of Korea.
Yujeong SeoDepartment of Life Systems, Sookmyung Women's University, Seoul, Republic of Korea.
Yonghwan KimDepartment of Life Systems, Sookmyung Women's University, Seoul, Republic of Korea.
Sukjoon YoonCenter for Advanced Bioinformatics and Systems Medicine, Sookmyung Women's University, Seoul, Republic of Korea.
Sookmyung Women's University · KR

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
NCI NIH HHS P30 CA016672
6 · The paper itself

Abstract

Genetic alterations in lung cancer are distinctly represented in non-small cell lung carcinoma (NSCLC) and small cell lung carcinoma (SCLC). Mutation of the RB1 and CDKN2A genes, which are tightly associated with cell cycle regulation, is exclusive to SCLC and NSCLC cells, respectively. Through the systematic analysis of transcriptome and proteome datasets for 318 cancer cell lines, we characterized differential gene expression and protein regulation in RB1-mutant SCLC and CDKN2A-mutant NSCLC. Many of the genes and proteins associated with RB1-mutant SCLC cell lines belong to functional categories of gene expression and transcription, whereas those associated with CDKN2A-mutant NSCLC cell lines were enriched in gene sets of the extracellular matrix and focal adhesion. These results indicate that the loss of RB1 and CDKN2A function induces distinctively different signaling cascades in SCLC and NSCLC cells. In addition, knockdown of the RB1 gene in CKDN2A-mutant cell lines (and vice versa) synergistically inhibits cancer cell proliferation. The present study on the exclusive role of RB1 and CDKN2A mutations in lung cancer subtypes demonstrates a synthetic lethal strategy for cancer regulation.

Indexed as

Carcinoma, Non-Small-Cell LungCell ProliferationCyclin-Dependent Kinase Inhibitor p16Gene Expression Regulation, NeoplasticHumansMutationProteomeRetinoblastoma ProteinSmall Cell Lung CarcinomaTranscriptomeTumor Cells, CulturedCyclin-Dependent Kinase Inhibitor p16ProteomeRetinoblastoma Protein

Identifiers

PMID26647789
PMCPMC6903902
OpenAlexW2172868992

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.