Evidence map›Paper›PMID 26647461›Full record

ArticleRNA (New York, N.Y.)2016

The CRISPR-associated Csx1 protein of Pyrococcus furiosus is an adenosine-specific endoribonuclease.

Nolan F Sheppard, Claiborne V C Glover, Rebecca M Terns, Michael P Terns

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 83 citations in OpenAlex.

  1. Structural mechanism of SAM-AMP and SAM-AMPNature communications · 2026
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  6. Cat1 forms filament networks to degrade NADScience (New York, N.Y.) · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Type III CRISPR-Cas: beyond the Cas10 effector complex.Trends in biochemical sciences · 2024
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Enzymatic properties of CARF-domain proteins inFrontiers in microbiology · 2022
    Article
  19. Cyclic Tetra-Adenylate (cABiomolecules · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nolan F SheppardDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.
Claiborne V C GloverDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.
Rebecca M TernsDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA.
Michael P TernsDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, USA Department of Genetics, University of Georgia, Athens, Georgia 30602, USA Department of Microbiology, University of Georgia, Athens, Georgia 30602, USA.
University of Georgia · US

Funding

CRISPR Capture, Destroy, and Counter-Attack MechanismsR35GM118160 · NIGMS · UNIVERSITY OF GEORGIA · PI TERNS, MICHAEL P · 2016 to 2025
$5.8M
Small RNA-based immunity by CRISPR-Cas complexes of Pyrococcus furiosusR01GM054682 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI TERNS, MICHAEL P, TERNS, REBECCA · 1997 to 2015
$4.8M
NIGMS NIH HHS GM54682NIGMS NIH HHS R01 GM054682NIGMS NIH HHS R35 GM118160
6 · The paper itself

Abstract

Prokaryotes are frequently exposed to potentially harmful invasive nucleic acids from phages, plasmids, and transposons. One method of defense is the CRISPR-Cas adaptive immune system. Diverse CRISPR-Cas systems form distinct ribonucleoprotein effector complexes that target and cleave invasive nucleic acids to provide immunity. The Type III-B Cmr effector complex has been found to target the RNA and DNA of the invader in the various bacterial and archaeal organisms where it has been characterized. Interestingly, the gene encoding the Csx1 protein is frequently located in close proximity to the Cmr1-6 genes in many genomes, implicating a role for Csx1 in Cmr function. However, evidence suggests that Csx1 is not a stably associated component of the Cmr effector complex, but is necessary for DNA silencing by the Cmr system in Sulfolobus islandicus. To investigate the function of the Csx1 protein, we characterized the activity of recombinant Pyrococcus furiosus Csx1 against various nucleic acid substrates. We show that Csx1 is a metal-independent, endoribonuclease that acts selectively on single-stranded RNA and cleaves specifically after adenosines. The RNA cleavage activity of Csx1 is dependent upon a conserved HEPN motif located within the C-terminal domain of the protein. This motif is also key for activity in other known ribonucleases. Collectively, the findings indicate that invader silencing by Type III-B CRISPR-Cas systems relies both on RNA and DNA nuclease activities from the Cmr effector complex as well as on the affiliated, trans-acting Csx1 endoribonuclease.

Indexed as

CRISPR-Cas SystemsAdenosineAmino Acid MotifsArchaeal ProteinsBase SequenceCRISPR-Associated ProteinsEndoribonucleasesEscherichia coliGene ExpressionModels, MolecularMolecular Sequence DataProtein Structure, SecondaryProtein Structure, TertiaryPyrococcus furiosusRecombinant ProteinsRNA, ArchaealAdenosineArchaeal ProteinsCRISPR-Associated ProteinsEndoribonucleasesRecombinant ProteinsRNA, ArchaealCARFCasCRISPRCsx1HEPNribonuclease

Identifiers

PMID26647461
PMCPMC4712672
OpenAlexW2221753603

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.