Evidence map›Paper›PMID 26646417›Full record

ReviewInternational journal of computer assisted radiology and surgery2016

Entropy-based particle correspondence for shape populations.

Ipek Oguz, Josh Cates, Manasi Datar, Beatriz Paniagua, Thomas Fletcher, Clement Vachet, Martin Styner, Ross Whitaker

Abstract readReview
In one paragraph

Review in International journal of computer assisted radiology and surgery, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Establishing Surface Correspondence for Post-surgical Cortical Thickness Changes in Temporal Lobe Epilepsy.Proceedings of SPIE--the International Society for Optical Engineering · 2021
    Article
  6. Article
  7. Surface-Based Spatial Pyramid Matching of Cortical Regions for Analysis of Cognitive Performance.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2019
    Article
  8. On the Evaluation and Validation of Off-the-shelf Statistical Shape Modeling Tools: A Clinical Application.Shape in medical imaging : International Workshop, ShapeMI 2018, held in conjunction with MICCAI 2018, Granada, Spain, September 20, 2018 : proceedings. ShapeMI (Workshop) (2018 : Granada, Spain) · 2018
    Article
  9. Article
  10. Hierarchical Vertex Regression-Based Segmentation of Head and Neck CT Images for Radiotherapy Planning.IEEE transactions on image processing : a publication of the IEEE Signal Processing Society · 2018
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ipek OguzUniversity of Iowa, Iowa City, IA, USA. ipek-oguz@uiowa.edu.
Josh CatesUniversity of Utah, Salt Lake City, UT, USA.
Manasi DatarUniversity of Utah, Salt Lake City, UT, USA.
Beatriz PaniaguaUniversity of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Thomas FletcherUniversity of Utah, Salt Lake City, UT, USA.
Clement VachetUniversity of Utah, Salt Lake City, UT, USA.
Martin StynerUniversity of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Ross WhitakerUniversity of Utah, Salt Lake City, UT, USA.

Funding

Washington University ConsoritumU54EB005149 · NIBIB · BRIGHAM AND WOMEN'S HOSPITAL · PI KIKINIS, RON · 2004 to 2013
$39.3M
UNC MRDD Research CenterP30HD003110 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BELGER, AYSENIL · 1985 to 2012
$28.7M
TRD - VisualizationP41GM103545 · NIGMS · UNIVERSITY OF UTAH · PI JURRUS, ELIZABETH · 2012 to 2019
$9.7M
Preclinical CoreU54HD079124 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BELGER, AYSENIL · 2013 to 2019
$8.0M
NIBIB NIH HHS U54 EB005149NICHD NIH HHS P30 HD003110NICHD NIH HHS U54 HD079124NIGMS NIH HHS P41 GM103545
6 · The paper itself

Abstract

purposeStatistical shape analysis of anatomical structures plays an important role in many medical image analysis applications such as understanding the structural changes in anatomy in various stages of growth or disease. Establishing accurate correspondence across object populations is essential for such statistical shape analysis studies.

methodsIn this paper, we present an entropy-based correspondence framework for computing point-based correspondence among populations of surfaces in a groupwise manner. This robust framework is parameterization-free and computationally efficient. We review the core principles of this method as well as various extensions to deal effectively with surfaces of complex geometry and application-driven correspondence metrics.

resultsWe apply our method to synthetic and biological datasets to illustrate the concepts proposed and compare the performance of our framework to existing techniques.

conclusionsThrough the numerous extensions and variations presented here, we create a very flexible framework that can effectively handle objects of various topologies, multi-object complexes, open surfaces, and objects of complex geometry such as high-curvature regions or extremely thin features.

Indexed as

AlgorithmsEntropyHumansImage Interpretation, Computer-AssistedReproducibility of ResultsSensitivity and SpecificityCorrespondenceEntropyShape analysis

Identifiers

PMID26646417
PMCPMC4899300

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.