Evidence map›Paper›PMID 26645605›Full record

ArticleAIDS (London, England)2016

CD4+ T-cell recovery with suppressive ART-induced rapid sequence evolution in hepatitis C virus envelope but not NS3.

Lin Liu, David Nardo, Eric Li, Gary P Wang

Abstract read
In one paragraph

Article in AIDS (London, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Lin LiuaDivision of Infectious Diseases and Global Medicine, Department of Medicine bDepartment of Pharmacology, University of Florida College of Medicine cNorth Florida/South Georgia Veterans Health System, Gainesville, Florida, USA.
David Nardo
Eric Li
Gary P Wang
GTx (United States) · USApple (Israel) · ILOffice of Infectious Diseases · US

Funding

HCV diversity and resistance analyzed by DNA bar coding and pyrosequencingK08AI077713 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI WANG, GARY P. · 2009 to 2012
$527k
NIAID NIH HHS K08 AI077713
6 · The paper itself

Abstract

objectivesCD4 T-cell depletion from HIV infection leads to a global decline in anti-hepatitis C virus (HCV) envelope neutralizing antibody (nAb) response, which may play a role in accelerating liver fibrosis. An increase in anti-HCV nAb titers has been reported during antiretroviral therapy (ART) but its impact on HCV remains poorly understood. The objective of this study is to determine the effects of ART on long-term HCV evolution. DESIGN AND

methodsWe examined HCV quasispecies structure and long-term evolution in HIV/HCV coinfected patients with ART-induced CD4 T-cell recovery, and compared with patients with CD4 T-cell depletion from delayed ART. We applied a single-variant sequencing (SVS) method to construct authentic viral quasispecies and compared sequence evolution in HCV envelope, the primary target for humoral immune responses, and NS3, a target for cellular immunity, between the two cohorts.

resultsThe SVS method corrected biases known to skew the proportions of viral variants, revealing authentic HCV quasispeices structures. We observed higher rates of HCV envelope sequence evolution in patients with ART-induced CD4 T-cell recovery, compared with patients with CD4 T-cell depletion from delayed ART (P = 0.03). Evolutionary rates for NS3 were considerably lower than the rates for envelope (P < 0.01), with no significant difference observed between the two groups.

conclusionART-induced CD4 T-cell recovery results in rapid sequence evolution in HCV envelope, but not in NS3. These results suggest that suppressive ART disproportionally enhances HCV-specific humoral responses more than cellular responses, resulting in rapid sequence evolution in HCV envelope but not NS3.

Indexed as

Evolution, MolecularAntibodies, NeutralizingAnti-Retroviral AgentsCD4-Positive T-LymphocytesDEAD-box RNA HelicasesGene Products, envHepacivirusHepatitis C AntibodiesHepatitis C, ChronicHIV InfectionsHumansNucleoside-TriphosphataseSelection, GeneticSequence Analysis, DNASerine EndopeptidasesViral Nonstructural ProteinsAntibodies, NeutralizingAnti-Retroviral AgentsDEAD-box RNA HelicasesGene Products, envHepatitis C AntibodiesNS3 protein, hepatitis C virusNucleoside-TriphosphataseSerine EndopeptidasesViral Nonstructural ProteinsViral Proteases

Identifiers

PMID26645605
PMCPMC4767613
OpenAlexW2196292465

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.