Evidence map›Paper›PMID 26645036›Full record

ArticleVirusdisease2015

Molecular typing and phylogenetic analysis of classical swine fever virus isolates from Kerala, India.

Nimisha Bhaskar, Chintu Ravishankar, R Rajasekhar, K Sumod, T G Sumithra, Koshy John, M Mini, Reghu Ravindran, Shiju Shaji, J Aishwarya

Open access · bronzeAbstract read
In one paragraph

Article in Virusdisease, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Open veterinary journal · 2023
    Article
  4. Article
  5. Classical Swine Fever in China-An Update Minireview.Frontiers in veterinary science · 2019
    Review
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Nimisha BhaskarDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Pookode, Lakkidi P.O., Wayanad, Kerala 673576 India.
Chintu RavishankarDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Pookode, Lakkidi P.O., Wayanad, Kerala 673576 India.
R RajasekharDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Pookode, Lakkidi P.O., Wayanad, Kerala 673576 India.
K SumodDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Pookode, Lakkidi P.O., Wayanad, Kerala 673576 India.
T G SumithraDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Mannuthy, Thrissur, Kerala 680651 India.
Koshy JohnDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Pookode, Lakkidi P.O., Wayanad, Kerala 673576 India.
M MiniDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Mannuthy, Thrissur, Kerala 680651 India.
Reghu RavindranDepartment of Veterinary Parasitology, College of Veterinary and Animal Sciences, Pookode, Lakkidi P.O., Wayanad, Kerala 673576 India.
Shiju ShajiDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Pookode, Lakkidi P.O., Wayanad, Kerala 673576 India.
J AishwaryaDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Pookode, Lakkidi P.O., Wayanad, Kerala 673576 India.
Kerala Veterinary and Animal Sciences University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Classical swine fever (CSF) is an economically important disease of pigs caused by CSF virus (CSFV) belonging to the genus Pestivirus within the family Flaviviridae. The disease is endemic in many countries including India. A comprehensive study was carried out to assess the type of CSFV circulating in the South Indian state of Kerala. During the period 2013-2014, clinical samples were collected from 19 suspected CSF outbreaks of domestic pigs in different districts of Kerala. The samples were tested using nested reverse transcription PCR (RT-PCR) targeting the E2 gene and RT-PCR for 5'UTR of the virus. Partial 5' UTR and E2 gene regions of six CSFV isolates were sequenced. Phylogenetic analysis revealed that all the CSFV isolates belonged to subgroup 2.2. The isolates showed close resemblance to the other CSFV isolates circulating in India. It was also observed that the CSFV viruses from Kannur district were distinct from those circulating in the other districts as evidenced by their divergence from other Kerala isolates in the phylogenetic tree. Close relationship was seen to the CSFV isolates from South East Asian countries.

Indexed as

5′UTRCSFVE2IndiaKeralaPhylogenySubgroup 2.2

Identifiers

PMID26645036
PMCPMC4663717
OpenAlexW1941518632

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.