Evidence map›Paper›PMID 26643037›Full record

ArticleScientific reports2015

Comparative transcriptomic analysis of silkworm Bmovo-1 and wild type silkworm ovary.

Renyu Xue, Xiaolong Hu, Liyuan Zhu, Guangli Cao, Moli Huang, Gaoxu Xue, Zuowei Song, Jiayu Lu, Xueying Chen, Chengliang Gong

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Renyu XueSchool of Biology &Basic Medical Science, Soochow University, Suzhou 215123, China.
Xiaolong HuSchool of Biology &Basic Medical Science, Soochow University, Suzhou 215123, China.
Liyuan ZhuSchool of Biology &Basic Medical Science, Soochow University, Suzhou 215123, China.
Guangli CaoSchool of Biology &Basic Medical Science, Soochow University, Suzhou 215123, China.
Moli HuangSchool of Biology &Basic Medical Science, Soochow University, Suzhou 215123, China.
Gaoxu XueSchool of Biology &Basic Medical Science, Soochow University, Suzhou 215123, China.
Zuowei SongSchool of Biology &Basic Medical Science, Soochow University, Suzhou 215123, China.
Jiayu LuSuzhou Zhenhua Middle School, Suzhou 215006, China.
Xueying ChenSuzhou Zhenhua Middle School, Suzhou 215006, China.
Chengliang GongSchool of Biology &Basic Medical Science, Soochow University, Suzhou 215123, China.
Soochow University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The detailed molecular mechanism of Bmovo-1 regulation of ovary size is unclear. To uncover the mechanism of Bmovo-1 regulation of ovarian development and oogenesis using RNA-Seq, we compared the transcriptomes of wild type (WT) and Bmovo-1-overexpressing silkworm (silkworm(+Bmovo-1)) ovaries. Using a pair-end Illumina Solexa sequencing strategy, 5,296,942 total reads were obtained from silkworm(+Bmovo-1) ovaries and 6,306,078 from WT ovaries. The average read length was about 100 bp. Clean read ratios were 98.79% for silkworm(+Bmovo-1) and 98.87% for WT silkworm ovaries. Comparative transcriptome analysis showed 123 upregulated and 111 downregulated genes in silkworm(+Bmovo-1) ovaries. These differentially expressed genes were enriched in the extracellular and extracellular spaces and involved in metabolism, genetic information processing, environmental information processing, cellular processes and organismal systems. Bmovo-1 overexpression in silkworm ovaries might promote anabolism for ovarian development and oogenesis and oocyte proliferation and transport of nutrients to ovaries by altering nutrient partitioning, which would support ovary development. Excessive consumption of nutrients for ovary development alters nutrient partitioning and deters silk protein synthesis.

Indexed as

Gene Expression ProfilingTranscriptomeAnimalsAnimals, Genetically ModifiedBombyxComputational BiologyFemaleGene Expression Regulation, DevelopmentalHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationOvaryReproducibility of Results

Identifiers

PMID26643037
PMCPMC4672304
OpenAlexW2411689515

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.