Evidence map›Paper›PMID 26642764›Full record

ArticleScientific reports2015

Gene expression changes triggered by end-of-day far-red light treatment on early developmental stages of Eustoma grandiflorum (Raf.) Shinn.

Yoshihiro Takemura, Katsuou Kuroki, Masahiro Katou, Masayuki Kishimoto, Wataru Tsuji, Eiji Nishihara, Fumio Tamura

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 86% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yoshihiro TakemuraFaculty of Agriculture, Tottori University, Koyama, Tottori 680-8553, Japan.
Katsuou KurokiFaculty of Agriculture, Tottori University, Koyama, Tottori 680-8553, Japan.
Masahiro KatouTottori Prefectural Agriculture and forest Research Institute, Horticultural Experiment Center, Hokuei, Tottori 689-2221, Japan.
Masayuki KishimotoTottori Prefectural Agriculture and forest Research Institute, Horticultural Experiment Center, Hokuei, Tottori 689-2221, Japan.
Wataru TsujiFaculty of Agriculture, Tottori University, Koyama, Tottori 680-8553, Japan.
Eiji NishiharaFaculty of Agriculture, Tottori University, Koyama, Tottori 680-8553, Japan.
Fumio TamuraFaculty of Agriculture, Tottori University, Koyama, Tottori 680-8553, Japan.
Tottori University · JPTottori Prefectural Museum · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To better understand the molecular mechanisms related to growth promotion in the early developmental stages of Eustoma grandiflorum (Raf.) Shinn. under end-of-day far-red light (EOD-FR) treatment, we analyzed the leaf transcriptome of treated (EOD) and untreated plants (Cont) by using RNA-seq technology. EOD-FR treatment for only about 2 weeks in regions with limited sunshine during winter resulted in significantly higher internode length between the 3rd and 4th nodes on the main stem in EOD than in Cont. Among the differentially expressed genes (DEGs) related to synthesis or transport of auxin, higher levels of YUCCA (CL6581) and PIN4 (CL6181) were noted after treatment in EOD than in Cont in the leaf. In addition, high expression levels of GA20ox (Unigene11862) related to gibberellin (GA) synthesis and transcription factor bHLH 135 (CL7761) were observed in the stem of EOD, 3 h after treatment. A vertical section of the stem showed that the pith length of cells at the 4th node was longer in EOD than in Cont. Collectively, these results suggested that EOD-FR treatment increased the expression of DEGs related to GA and auxin biosynthesis, bHLH transcription factor, and internodal cell elongation along the longitudinal axis of Eustoma plants.

Indexed as

LightComputational BiologyGene Expression ProfilingGene Expression Regulation, PlantGene OntologyHigh-Throughput Nucleotide SequencingPlant LeavesPlant StemsReproducibility of ResultsTracheophytaTranscriptome

Identifiers

PMID26642764
PMCPMC4672308
OpenAlexW2408205181

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.