Evidence map›Paper›PMID 26642209›Full record

ArticlePloS one2015

Nuclear Receptor-Like Structure and Interaction of Congenital Heart Disease-Associated Factors GATA4 and NKX2-5.

Sini Kinnunen, Mika Välimäki, Marja Tölli, Gerd Wohlfahrt, Rami Darwich, Hiba Komati, Mona Nemer, Heikki Ruskoaho

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Molecular syndromology · 2026
    Article
  5. Article
  6. Procollagen IIA mediates positive feedback control of the mouse cardiogenic transcriptional network.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. The molecular mechanisms of cardiac development and related diseases.Signal transduction and targeted therapy · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Journal of pediatric genetics · 2021
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Sini KinnunenDivision of Pharmacology and Pharmacotherapy, University of Helsinki, Helsinki, Finland.
Mika VälimäkiDivision of Pharmacology and Pharmacotherapy, University of Helsinki, Helsinki, Finland.
Marja TölliInstitute of Biomedicine, Department of Pharmacology and Toxicology, University of Oulu, Oulu, Finland.
Gerd WohlfahrtOrion Pharma, Computer-Aided Drug Design, Espoo, Finland.
Rami DarwichLaboratory of Cardiac Development and Differentiation, Department of Biochemistry, Immunology and Microbiology, University of Ottawa, Ottawa, Canada.
Hiba KomatiLaboratory of Cardiac Development and Differentiation, Department of Biochemistry, Immunology and Microbiology, University of Ottawa, Ottawa, Canada.
Mona NemerLaboratory of Cardiac Development and Differentiation, Department of Biochemistry, Immunology and Microbiology, University of Ottawa, Ottawa, Canada.
Heikki RuskoahoDivision of Pharmacology and Pharmacotherapy, University of Helsinki, Helsinki, Finland.
University of Ottawa · CAUniversity of Helsinki · FIUniversity of Oulu · FIOrion Corporation (Finland) · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimsTranscription factor GATA4 is a dosage sensitive regulator of heart development and alterations in its level or activity lead to congenital heart disease (CHD). GATA4 has also been implicated in cardiac regeneration and repair. GATA4 action involves combinatorial interaction with other cofactors such as NKX2-5, another critical cardiac regulator whose mutations also cause CHD. Despite its critical importance to the heart and its evolutionary conservation across species, the structural basis of the GATA4-NKX2-5 interaction remains incompletely understood. METHODS AND

resultsA homology model was constructed and used to identify surface amino acids important for the interaction of GATA4 and NKX2-5. These residues were subjected to site-directed mutagenesis, and the mutant proteins were characterized for their ability to bind DNA and to physically and functionally interact with NKX2-5. The studies identify 5 highly conserved amino acids in the second zinc finger (N272, R283, Q274, K299) and its C-terminal extension (R319) that are critical for physical and functional interaction with the third alpha helix of NKX2-5 homeodomain. Integration of the experimental data with computational modeling suggests that the structural arrangement of the zinc finger-homeodomain resembles the architecture of the conserved DNA binding domain of nuclear receptors.

conclusionsThe results provide novel insight into the structural basis for protein-protein interactions between two important classes of transcription factors. The model proposed will help to elucidate the molecular basis for disease causing mutations in GATA4 and NKX2-5 and may be relevant to other members of the GATA and NK classes of transcription factors.

Indexed as

Models, BiologicalMutationAnimalsChlorocebus aethiopsCOS CellsDNAGATA4 Transcription FactorHeart Defects, CongenitalHomeobox Protein Nkx-2.5Homeodomain ProteinsMiceProtein BindingProtein Structure, TertiaryReceptors, Cytoplasmic and NuclearTranscription FactorsZinc FingersDNAGata4 protein, mouseGATA4 Transcription FactorHomeobox Protein Nkx-2.5Homeodomain ProteinsNkx2-5 protein, mouseReceptors, Cytoplasmic and NuclearTranscription Factors

Identifiers

PMID26642209
PMCPMC4671672
OpenAlexW2292613782

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.