Evidence map›Paper›PMID 26642067›Full record

ArticlePloS one2015

Release of 50 new, drug-like compounds and their computational target predictions for open source anti-tubercular drug discovery.

María Jose Rebollo-Lopez, Joël Lelièvre, Daniel Alvarez-Gomez, Julia Castro-Pichel, Francisco Martínez-Jiménez, George Papadatos, Vinod Kumar, Gonzalo Colmenarejo, Grace Mugumbate, Mark Hurle and 14 more

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
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  5. MedComm · 2023
    Review
  6. Assay development and inhibition of theMicrobiology (Reading, England) · 2023
    Article
  7. Article
  8. Article
  9. Frontiers in cellular and infection microbiology · 2022
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Physicochemical properties andRSC medicinal chemistry · 2020
    Review
  17. Mycobacterial drug discovery.RSC medicinal chemistry · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

María Jose Rebollo-LopezDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Joël LelièvreDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Daniel Alvarez-GomezDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Julia Castro-PichelDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Francisco Martínez-JiménezGenome Biology Group, Centre Nacional d'Anàlisi Genòmica (CNAG), Barcelona, Spain.
George PapadatosEuropean Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge, United Kingdom.
Vinod KumarComputational Biology, Quantitative Sciences, GlaxoSmithKline, Collegeville, Pennsylvania, United States of America.
Gonzalo ColmenarejoCentro de Investigación Básica, CSci Computational Chemistry, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Grace MugumbateEuropean Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge, United Kingdom.
Mark HurleComputational Biology, Quantitative Sciences, GlaxoSmithKline, Collegeville, Pennsylvania, United States of America.
Vanessa BarrosoCentro de Investigación Básica, Platform Technology & Science, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Rob J YoungCSC Medicinal Chemistry, Medicines Research Centre, GlaxoSmithKline, Stevenage, Hertfordshire, United Kingdom.
María Martinez-HoyosDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Rubén González del RíoDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Robert H BatesDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Eva Maria Lopez-RomanDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Alfonso Mendoza-LosanaDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
James R BrownComputational Biology, Quantitative Sciences, GlaxoSmithKline, Collegeville, Pennsylvania, United States of America.
Emilio Alvarez-RuizCentro de Investigación Básica, Platform Technology & Science, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Marc A Marti-RenomGenome Biology Group, Centre Nacional d'Anàlisi Genòmica (CNAG), Barcelona, Spain.
John P OveringtonEuropean Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge, United Kingdom.
Nicholas CammackDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Lluís BallellDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.
David Barros-AguireDiseases of the Developing World, GlaxoSmithKline, Tres Cantos, Madrid, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As a follow up to the antimycobacterial screening exercise and the release of GSK´s first Tres Cantos Antimycobacterial Set (TCAMS-TB), this paper presents the results of a second antitubercular screening effort of two hundred and fifty thousand compounds recently added to the GSK collection. The compounds were further prioritized based on not only antitubercular potency but also on physicochemical characteristics. The 50 most attractive compounds were then progressed for evaluation in three different predictive computational biology algorithms based on structural similarity or GSK historical biological assay data in order to determine their possible mechanisms of action. This effort has resulted in the identification of novel compounds and their hypothesized targets that will hopefully fuel future TB drug discovery and target validation programs alike.

Indexed as

AlgorithmsAntitubercular AgentsCell Line, TumorComputational BiologyDrug DesignDrug DiscoveryHep G2 CellsHumansMycobacterium tuberculosisAntitubercular Agents

Identifiers

PMID26642067
PMCPMC4671658

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.