Evidence map›Paper›PMID 26640126›Full record

ArticleNature communications2015

Identification of an allosteric binding site for RORγt inhibition.

Marcel Scheepstra, Seppe Leysen, Geert C van Almen, J Richard Miller, Jennifer Piesvaux, Victoria Kutilek, Hans van Eenennaam, Hongjun Zhang, Kenneth Barr, Sunil Nagpal and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
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  6. Review
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  8. Review
  9. Article
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  11. The application of machine learning methods to the prediction of novel ligands for RORComputational and structural biotechnology journal · 2023
    Article
  12. Review
  13. Exploring Ligand Binding Domain Dynamics in the NRs Superfamily.International journal of molecular sciences · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 2 countries.

Marcel ScheepstraLaboratory of Chemical Biology, Department of Biomedical Engineering and Institute of Complex Molecular Systems, Eindhoven University of Technology, PO Box 513, Eindhoven 5600MB, The Netherlands.
Seppe LeysenLaboratory of Chemical Biology, Department of Biomedical Engineering and Institute of Complex Molecular Systems, Eindhoven University of Technology, PO Box 513, Eindhoven 5600MB, The Netherlands.
Geert C van AlmenLaboratory of Chemical Biology, Department of Biomedical Engineering and Institute of Complex Molecular Systems, Eindhoven University of Technology, PO Box 513, Eindhoven 5600MB, The Netherlands.
J Richard MillerMerck Research Laboratories, 33 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Jennifer PiesvauxMerck Research Laboratories, 33 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Victoria KutilekMerck Research Laboratories, 33 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Hans van EenennaamMerck Research Laboratories, Molenstraat 110, Oss 5342 CC, The Netherlands.
Hongjun ZhangMerck Research Laboratories, 33 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Kenneth BarrMerck Research Laboratories, 33 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Sunil NagpalMerck Research Laboratories, 33 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Stephen M SoissonMerck Research Laboratories, 770 Sumneytown Pike, West Point, Pennsylvania 19486, USA.
Maria KornienkoMerck Research Laboratories, 503 Louise Lane, North Wales, Pennsylvania 19454, USA.
Kristen WileyMerck Research Laboratories, 503 Louise Lane, North Wales, Pennsylvania 19454, USA.
Nathaniel ElsenMerck Research Laboratories, 503 Louise Lane, North Wales, Pennsylvania 19454, USA.
Sujata SharmaMerck Research Laboratories, 503 Louise Lane, North Wales, Pennsylvania 19454, USA.
Craig C CorrellMerck Research Laboratories, 33 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
B Wesley TrotterMerck Research Laboratories, 33 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Mario van der SteltMerck Research Laboratories, Molenstraat 110, Oss 5342 CC, The Netherlands.
Arthur OubrieMerck Research Laboratories, Molenstraat 110, Oss 5342 CC, The Netherlands.
Christian OttmannLaboratory of Chemical Biology, Department of Biomedical Engineering and Institute of Complex Molecular Systems, Eindhoven University of Technology, PO Box 513, Eindhoven 5600MB, The Netherlands.
Gopal ParthasarathyMerck Research Laboratories, 770 Sumneytown Pike, West Point, Pennsylvania 19486, USA.
Luc BrunsveldLaboratory of Chemical Biology, Department of Biomedical Engineering and Institute of Complex Molecular Systems, Eindhoven University of Technology, PO Box 513, Eindhoven 5600MB, The Netherlands.
Merck & Co., Inc., Rahway, NJ, USA (United States) · USEindhoven University of Technology · NLMerck (Netherlands) · NLUnited States Military Academy · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RORγt is critical for the differentiation and proliferation of Th17 cells associated with several chronic autoimmune diseases. We report the discovery of a novel allosteric binding site on the nuclear receptor RORγt. Co-crystallization of the ligand binding domain (LBD) of RORγt with a series of small-molecule antagonists demonstrates occupancy of a previously unreported allosteric binding pocket. Binding at this non-canonical site induces an unprecedented conformational reorientation of helix 12 in the RORγt LBD, which blocks cofactor binding. The functional consequence of this allosteric ligand-mediated conformation is inhibition of function as evidenced by both biochemical and cellular studies. RORγt function is thus antagonized in a manner molecularly distinct from that of previously described orthosteric RORγt ligands. This brings forward an approach to target RORγt for the treatment of Th17-mediated autoimmune diseases. The elucidation of an unprecedented modality of pharmacological antagonism establishes a mechanism for modulation of nuclear receptors.

Indexed as

Allosteric SiteAnimalsCell DifferentiationHumansInterleukin-17LigandsMiceNuclear Receptor Subfamily 1, Group F, Member 3Protein Structure, TertiaryTh17 CellsInterleukin-17LigandsNuclear Receptor Subfamily 1, Group F, Member 3RORC protein, humanRorc protein, mouse

Identifiers

PMID26640126
PMCPMC4686831
OpenAlexW2259112062

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.