Evidence map›Paper›PMID 26640122›Full record

ArticleJournal of virological methods2016

Comparative analytical evaluation of the respiratory TaqMan Array Card with real-time PCR and commercial multi-pathogen assays.

John J Harvey, Stephanie Chester, Stephen A Burke, Marisela Ansbro, Tricia Aden, Remedios Gose, Rebecca Sciulli, Jing Bai, Lucy DesJardin, Jeffrey L Benfer and 23 more

Abstract readComparative StudyEvaluation StudyMulticenter Study
In one paragraph

Article in Journal of virological methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

John J HarveyBattelle Technical On-Site Professional Services, Atlanta, GA, 30329 USA; Centers for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA. Electronic address: xba6@cdc.gov.
Stephanie ChesterAssociation of Public Health Laboratories, Silver Spring, MD, 20904 USA.
Stephen A BurkeBattelle Technical On-Site Professional Services, Atlanta, GA, 30329 USA; Centers for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Marisela AnsbroBattelle Technical On-Site Professional Services, Atlanta, GA, 30329 USA; Centers for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Tricia AdenBattelle Technical On-Site Professional Services, Atlanta, GA, 30329 USA; Association of Public Health Laboratories, Silver Spring, MD, 20904 USA.
Remedios GoseHawaii Department of Health State Laboratories, Pearl City, HI, 96782 USA.
Rebecca SciulliHawaii Department of Health State Laboratories, Pearl City, HI, 96782 USA.
Jing BaiIowa State Hygienic Laboratory, Coralville, IA, 52241 USA.
Lucy DesJardinIowa State Hygienic Laboratory, Coralville, IA, 52241 USA.
Jeffrey L BenferIowa State Hygienic Laboratory, Coralville, IA, 52241 USA.
Joshua HallWilliam A. Hinton State Laboratory Institute, Jamaica Plain, MA, 02130 USA.
Sandra SmoleWilliam A. Hinton State Laboratory Institute, Jamaica Plain, MA, 02130 USA.
Kimberly DoanWilliam A. Hinton State Laboratory Institute, Jamaica Plain, MA, 02130 USA.
Michael D PopowichWadsworth Center, New York State Department of Health, Albany, NY, 12201-0509 USA.
Kirsten St GeorgeWadsworth Center, New York State Department of Health, Albany, NY, 12201-0509 USA.
Tammy QuinlanWadsworth Center, New York State Department of Health, Albany, NY, 12201-0509 USA.
Tanya A HalseWadsworth Center, New York State Department of Health, Albany, NY, 12201-0509 USA.
Zhen LiWashington State Public Health Laboratories, Shoreline, WA, 98155-7224 USA.
Ailyn C Pérez-OsorioWashington State Public Health Laboratories, Shoreline, WA, 98155-7224 USA.
William A GloverWashington State Public Health Laboratories, Shoreline, WA, 98155-7224 USA.
Denny RussellWashington State Public Health Laboratories, Shoreline, WA, 98155-7224 USA.
Erik ReisdorfWisconsin State Laboratory of Hygiene, Madison, WI, USA.
Thomas WhyteWisconsin State Laboratory of Hygiene, Madison, WI, USA.
Brett WhitakerCenters for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Cynthia HatcherCenters for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Velusamy SrinivasanCenters for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Kathleen TattiCenters for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Maria Lucia TondellaCenters for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Xin WangCenters for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Jonas M WinchellCenters for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Leonard W MayerCenters for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Daniel JerniganCenters for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.
Alison C MawleCenters for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, GA, 30329-4027 USA.

Funding

NCHM CDC HHS U60 HM000803NCHM CDC HHS U60HM000803
6 · The paper itself

Abstract

In this study, a multicenter evaluation of the Life Technologies TaqMan(®) Array Card (TAC) with 21 custom viral and bacterial respiratory assays was performed on the Applied Biosystems ViiA™ 7 Real-Time PCR System. The goal of the study was to demonstrate the analytical performance of this platform when compared to identical individual pathogen specific laboratory developed tests (LDTs) designed at the Centers for Disease Control and Prevention (CDC), equivalent LDTs provided by state public health laboratories, or to three different commercial multi-respiratory panels. CDC and Association of Public Health Laboratories (APHL) LDTs had similar analytical sensitivities for viral pathogens, while several of the bacterial pathogen APHL LDTs demonstrated sensitivities one log higher than the corresponding CDC LDT. When compared to CDC LDTs, TAC assays were generally one to two logs less sensitive depending on the site performing the analysis. Finally, TAC assays were generally more sensitive than their counterparts in three different commercial multi-respiratory panels. TAC technology allows users to spot customized assays and design TAC layout, simplify assay setup, conserve specimen, dramatically reduce contamination potential, and as demonstrated in this study, analyze multiple samples in parallel with good reproducibility between instruments and operators.

Indexed as

BacteriaCenters for Disease Control and Prevention, U.S.HumansMicrofluidicsOligonucleotide Array Sequence AnalysisReal-Time Polymerase Chain ReactionReproducibility of ResultsRespiratory Tract InfectionsSensitivity and SpecificityUnited StatesVirusesAnalytical techniquesComparative studiesMicrofluidicsPCRRespiratory pathogens

Identifiers

PMID26640122
PMCPMC7113746

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.